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概要と使いどころ
Apply this opinionated workflow when modernizing legacy systems: strangler fig pattern, branch by abstraction, characterization tests, incremental monolith decomposition, framework upgrades, feature-flagged migration with rollback.
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Apply this opinionated workflow when reverse-engineering legacy or undocumented systems: scope, explore the code, trace data flows, document in EARS format, flag uncertainties. For code archaeology, onboarding, and requirements extraction.
日本語の概要は準備中です。原文の説明を表示しています。
Run an explicitly requested, unusually strict dygo maintainability audit that seeks structural simplification, removes accidental complexity, and challenges weak abstractions without changing behavior.
日本語の概要は準備中です。原文の説明を表示しています。
Automate web scraping and data extraction with Apify -- run Actors, manage datasets, create reusable tasks, and retrieve crawl results through the Composio Apify integration.
日本語の概要は準備中です。原文の説明を表示しています。
Evaluate repeated code and consolidate duplication when a shared abstraction improves correctness or maintenance. Use after introducing similar logic or when repeated changes reveal a missing source of truth.
日本語の概要は準備中です。原文の説明を表示しています。
Post-build pass reducing complexity without changing behavior. Catches dead code, needless abstractions, over-engineering. NOT for style (mk:clean-code) or diff review (mk:review).
日本語の概要は準備中です。原文の説明を表示しています。
Session-persistent browser automation via Playwright CLI: form filling, screenshots, data extraction, multi-step flows. NOT for autonomous flows (mk:agent-browser) or .spec.ts E2E code (mk:qa-manual).
日本語の概要は準備中です。原文の説明を表示しています。
Post-implementation simplification pass. Reduces complexity without changing behavior. Use after Phase 3 (Build GREEN) and before Phase 4 (Review). Catches dead code, unnecessary abstractions, over-engineering, and redundant patterns. Triggers on "simplify", "clean up", "reduce complexity", "too complex". NOT for style/convention enforcement (see mk:clean-code); NOT for reviewing diffs or PRs (see mk:review).
日本語の概要は準備中です。原文の説明を表示しています。
Use when stuck on approach (not debugging). Strategic unsticking via 7 non-default techniques: simplification cascades, collision-zone thinking, meta-pattern recognition, inversion, scale game, first principles, via negativa. Triggers on complexity spiraling, innovation block, recurring patterns across domains, forced-assumption solutions, scale uncertainty, told-it's-impossible, or bloated systems needing subtraction. For evidence-based root-cause debugging, use mk:sequential-thinking instead.
日本語の概要は準備中です。原文の説明を表示しています。
Deep spec analysis on a Confluence page. Reads page (+ children) via the confluence-as wrapper, produces a structured Spec Research Report with requirements, acceptance criteria, gaps, ambiguities, and suggested user stories for human review. Read-only — does NOT create Jira tickets. Triggers: 'analyze spec for PAGE-ID', 'extract requirements from confluence page', 'spec research on URL'. NOT for raw page CRUD (mk:confluence-page); NOT for ticket complexity scoring (mk:planning-engine).
日本語の概要は準備中です。原文の説明を表示しています。
Browser automation CLI for AI agents using agent-browser. Use for navigating websites, clicking/filling pages, screenshots, data extraction, web app testing, exploratory QA, dogfooding, Electron apps, Slack automation, Vercel Sandbox browser runs, AWS AgentCore cloud browsers, auth-heavy flows, and long autonomous browser sessions. Prefer over generic browser tools when a fresh/tool-managed Chrome session is fine. NOT for the user's real Chrome cookies/profile (see mk:chrome-profile); NOT for reusable Playwright specs (see mk:qa-manual).
日本語の概要は準備中です。原文の説明を表示しています。
Relentlessly interview the user about THEIR plan or design — one question at a time — resolving each branch of a decision tree until shared understanding. Claude is the interviewer; the user is the interviewee. Triggers on "grill me", "stress-test this plan", "get grilled on my design", "interrogate my plan". Checkpoints every answer to docs/knowledge/<slug>.md so progress survives a context-window reset. Flags knowledge the user cannot answer as a gap to chase. Do NOT use to PROPOSE solutions or compare approaches (→ mk:brainstorming). Do NOT use to validate "is this worth building?" (→ mk:office-hours). Do NOT use when Claude should ANSWER questions about the repo (→ mk:ask-me). Do NOT use for a one-shot review of an existing plan (→ mk:plan-ceo-review). Do NOT use to apply named reasoning lenses to findings (→ mk:elicit).
日本語の概要は準備中です。原文の説明を表示しています。
Run an extremely strict maintainability review for abstraction quality, giant files, and spaghetti-condition growth. Use for a thermo-nuclear code quality review, thermonuclear review, deep code quality audit, or especially harsh maintainability review.
日本語の概要は準備中です。原文の説明を表示しています。
Expert in temporal event detection, spatio-temporal clustering (ST-DBSCAN), and photo context understanding. Use for detecting photo events, clustering by time/location, shareability prediction, place recognition, event significance scoring, and life event detection. Activate on 'event detection', 'temporal clustering', 'ST-DBSCAN', 'spatio-temporal', 'shareability prediction', 'place recognition', 'life events', 'photo events', 'temporal diversity'. NOT for individual photo aesthetic quality (use photo-composition-critic), color palette analysis (use color-theory-palette-harmony-expert), face recognition implementation (use photo-content-recognition-curation-expert), or basic EXIF timestamp extraction.
日本語の概要は準備中です。原文の説明を表示しています。
Generate, fill, and assemble PDF documents at scale. Handles legal forms, contracts, invoices, certificates. Supports form filling (pdf-lib), template rendering (Puppeteer, LaTeX), digital signatures (DocuSign), and document assembly. Use for legal tech, HR automation, invoice generation. Activate on "PDF generation", "form filling", "document automation", "digital signatures". NOT for simple PDF viewing, basic file conversion, or OCR text extraction.
日本語の概要は準備中です。原文の説明を表示しています。
Matches natural language task descriptions to appropriate skills using semantic similarity. Handles fuzzy matching, intent extraction, and capability alignment. Activate on 'find skill', 'match task', 'semantic search', 'skill lookup', 'what skill for'. NOT for ranking matches (use dag-capability-ranker) or skill catalog (use dag-skill-registry).
日本語の概要は準備中です。原文の説明を表示しています。
Apply hierarchical decomposition and structural exploitation strategies from DAG theory to complex system design, problem-solving, and abstraction challenges
日本語の概要は準備中です。原文の説明を表示しています。
Model organizations as BDI systems with filtered perception, discourse-shaped desires, accommodations, and abstraction-level hierarchy. Use for socio-technical coordination and organizational modeling. NOT for mechanistic workflows, individual psychology, or non-social domains.
日本語の概要は準備中です。原文の説明を表示しています。
Detects somatic mutations in circulating tumor DNA, treating low-VAF detection as a signal-versus-noise problem set by error suppression and molecules sampled, not by the choice of caller. Distinguishes de novo CALLING (scanning a panel for unknown variants, bounded by per-locus error and multiple testing) from tumor-informed DETECTION (tracking a pre-specified variant set, where panel integration reaches single-ppm). Covers VarDict and Mutect2 for de novo calling, UMI-aware callers, and a pysam-based known-variant VAF tracker, with matched-WBC subtraction as the mandatory defense against clonal hematopoiesis (the dominant false positive). Use when calling or tracking tumor mutations from plasma cfDNA, setting a VAF threshold, or deciding whether a low-VAF call is tumor versus CHIP.
日本語の概要は準備中です。原文の説明を表示しています。
Model gene-family birth-death dynamics across a species tree using CAFE5 (Mendes et al 2020 Bioinformatics 36:5516 gamma-distributed rate categories), CAFE5-error (annotation-error-aware), Count (Csurös 2010 ancestral state reconstruction), BadiRate (Librado 2012 likelihood + parsimony), DupliPHY-Family, and ALE/AleRax (for per-family DTL; see [[gene-tree-species-tree-reconciliation]]). Test lineage-specific gene-family expansions and contractions, distinguish biological dynamics from annotation artifacts, account for assembly fragmentation, identify functional enrichment in expanded / contracted families. Use when correlating gene-family changes with phenotype evolution, ranking lineages by adaptive gene-family-rate shifts, post-WGD dosage-balance analysis, or building Birth-death models from OrthoFinder presence/absence matrices.
日本語の概要は準備中です。原文の説明を表示しています。
Build whole-genome alignments using Progressive Cactus (Armstrong 2020 reference-free clade-level WGA), Minigraph-Cactus (Hickey 2024 pangenome-aware), LASTZ chain/net (UCSC pipeline), MUMmer4 (Marçais 2018 pairwise), minimap2 -x asm5/10/20 (Li 2018 fast pairwise), AnchorWave (Song 2022 WGD-aware), and Mauve / progressiveMauve (bacterial). Operates the HAL toolkit (Hickey 2013) for downstream extraction including halSynteny, halLiftover, halBranchMutations, and hal2maf. Use when constructing multi-species alignments for comparative-annotation projection (TOGA), synteny detection, conservation analyses (phyloP / PhastCons), or pangenome graph construction; selecting between reference-free (Cactus) and reference-anchored (LASTZ chains/nets) approaches; tuning sensitivity for closely vs distantly related genomes; or producing HAL files for genome-wide downstream tools.
日本語の概要は準備中です。原文の説明を表示しています。
Preprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI extraction, adapter trimming, length filtering, and post-alignment PCR-duplicate collapse. Use when raw CLIP FASTQ must be turned into deduplicated, crosslink-preserving BAM input for peak calling; choosing between two-pass and single-pass adapter trimming; deciding minimum read length; or mapping UMI patterns to specific eCLIP/iCLIP/iCLIP2/iCLIP3 library preps.
日本語の概要は準備中です。原文の説明を表示しています。
Extracts and assigns COSMIC v3.4 mutational signatures (86 SBS / 11 DBS / 18 ID / 21 CN / 16 SV) from somatic VCFs using SigProfilerSuite, MutationalPatterns, MuSiCal mvNMF, SigNet, or HRDetect. Use when characterizing DNA-damage etiology (BRCA1/2 HRD, MMR-D, POLE, APOBEC3A, UV, tobacco, aflatoxin, 5-FU/SBS17b, platinum, colibactin SBS88), routing PARP inhibitor decisions, or auditing de novo extraction vs refit choice for cohort size.
日本語の概要は準備中です。原文の説明を表示しています。
Recommends hydrocortisone stress dosing during the active phase of labor for pregnant patients with primary adrenal insufficiency, using a regimen similar to major surgical stress. Trigger phrases: "active phase of labor", "cervix dilation ≥4 cm", "contractions every 5 minutes", "PAI patient in labor".
日本語の概要は準備中です。原文の説明を表示しています。