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概要と使いどころ
集群数据管理 Skill —— 涵盖数据使用规范、压缩优化、数据共享（ACL）、文件扫描与清理、文件完整性校验、genozip 基因组压缩等全流程。Use when the user asks about: managing data on the HPC cluster, compressing genomic files (fq/bam/vcf), sharing data between users/groups, scanning for large files or cleaning up disk space, checking file integrity (md5/gzip/bam), using genozip, checking disk quota, or any data lifecycle management task on the NCPGR HPC cluster.
日本語の概要は準備中です。原文の説明を表示しています。
Sort alignment files by coordinate or read name using samtools and pysam. Use when preparing BAM files for indexing, variant calling, or paired-end analysis.
日本語の概要は準備中です。原文の説明を表示しています。
Project workflow for PRDs, task tracking, changelog sync, and documentation updates. Use for any non-trivial task that spans multiple steps, touches several files, changes architecture, or needs project tracking updates. Also activates with @update to sync task.md, changelog.md, and files.md after completing work.
日本語の概要は準備中です。原文の説明を表示しています。
Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.
日本語の概要は準備中です。原文の説明を表示しています。
docs (editable docs people share and comment on; the default for any document, named as a doc or not: a document, report, proposal, resume, cover letter, letter, contract, policy, form, template, worksheet, essay, handbook, guide, how-to, cheat sheet, SOP or other writing to keep, share, collaborate on, send, submit, print or sign; a doc exports to Word, PDF, Markdown or Google Docs, so needing a file to send, attach, upload, submit or print is no reason to pick Word, and a file nobody asked for is a doc, not Word; a plan, comparison, summary or notes asked in chat stays in chat; a pasted claude.ai artifact link may be a doc: check with docs tools first; Word or another file format named, tracked changes wanted, or a .docx to change or use as a template → that format's skill): making one → if no docs-connector instructions are in context, call its `guide` (topic.instructions) first; then create the doc (headings only, no body) before any search, file read or plan, even with files attached.
日本語の概要は準備中です。原文の説明を表示しています。
Memory consolidation pass: orient on existing memories, gather signal from logs/transcripts, merge updates into topic files, prune index. Use on 'dream', 'consolidate memory', 'clean up memories', 'prune memories', 'memory maintenance', or when memories feel stale.
日本語の概要は準備中です。原文の説明を表示しています。
Use this skill any time a spreadsheet file is the primary input or output. This means any task where the user wants to: open, read, edit, or fix an existing .xlsx, .xlsm, .xltx, .csv, or .tsv file (e.g., adding columns, computing formulas, formatting, charting, cleaning messy data); create a new spreadsheet from scratch or from other data sources; or convert between tabular file formats. Trigger especially when the user references a spreadsheet file by name or path — even casually (like "the xlsx in my downloads") — and wants something done to it or produced from it. Also trigger for cleaning or restructuring messy tabular data files (malformed rows, misplaced headers, junk data) into proper spreadsheets. The deliverable must be a spreadsheet file. Do NOT trigger when the primary deliverable is a Word document, HTML report, standalone Python script, database pipeline, or Google Sheets API integration, even if tabular data is involved.
日本語の概要は準備中です。原文の説明を表示しています。
Read this before the first Google Drive, Docs, Sheets or Slides connector call whenever the task creates or changes a Google file. Use this skill whenever the user wants to create or change a Google Doc, Sheet or Slides file in their Google Drive. Triggers include: a request that names Google Docs, Sheets, Slides or Drive and asks to make, edit, format, copy or rename a file; a docs.google.com link with a request to change that file, even a one-line fix or suggested edits; and any follow-up change to a Google file from earlier in the chat, even "change it" or "add a tab". Includes helper scripts for document positions, cell ranges and slide layout. However, if the user asks for a doc, deck or spreadsheet without naming Google, or gives a Google file only as source material for something new, use Claude's own output type instead. Do NOT use for read-only questions about a Google file, or for Word, Excel, PowerPoint or PDF files.
日本語の概要は準備中です。原文の説明を表示しています。
ai-agents/ と dotfiles/ の編集内容を各 AI CLI（~/.claude, ~/.codex）と ~/.config へ反映するデプロイ手順。「設定を反映」「デプロイ」「~/.claude に配って」「スキル/エージェント/設定を更新したから配布」等を求められたときに使用する。
Use by any agent before writing specs, editing code, or changing workflow files when the change could add compatibility behavior, aliases, silent fallbacks, or default-value fallbacks.
日本語の概要は準備中です。原文の説明を表示しています。
Build EcoSIM atmospheric greenhouse-gas forcing files by combining a historical monthly atmgas NetCDF with RCMIP/CMIP6 SSP concentration pathways. Use when Codex needs SSP245/SSP585 or other SSP atmospheric CO2, CH4, and N2O concentrations, key-year tables, or scenario NetCDF files spanning historical years through 2100 for EcoSIM or related biogeochemical forcing workflows.
日本語の概要は準備中です。原文の説明を表示しています。
Edit EcoSIM PFT-parameter NetCDF files such as ecosim_pftpar_20260303.nc with the ParEditor class from applications/notebooks/scripts/ParamEditor.py. Use when asked to modify, scale, copy, compare, or delete PFT parameter records for a plant functional type (six-character pfts code such as gr3s43 or ndlf34), update microbe parameter NetCDF values, or maintain the JSONL change log that records past parameter changes. Never modify plant_trait.*.desc files; they are read-only references.
日本語の概要は準備中です。原文の説明を表示しています。
Sort AmeriFlux BASE-BADM BIF variables from Excel or CSV files into observation, management-event, static metadata, and plotting-ready target time-series tables. Use when Codex is asked to sort AmeriFlux BIF variables into time series; organize BADM/BIF variables by date; pivot AMF *_BIF_*.xlsx files by GROUP_ID; output total LAI, leaf mass per area, above-ground biomass, canopy height, fruit yield, or total yield time series; write MATLAB readers for BIF time-series plotting; or prepare dated AmeriFlux site observations and management records for EcoSIM workflows.
日本語の概要は準備中です。原文の説明を表示しています。
Convert AmeriFlux ERA5 half-hourly meteorological CSV files into EcoSIM hourly climate forcing NetCDF files, compare generated forcing against overlapping measured tower meteorology when a FULLSET file is available, and report large biases or errors. Use when preparing or validating EcoSIM climate inputs for AmeriFlux sites, checking ERA5 against in situ records, diagnosing forcing discrepancies, or writing climate-quality reports. For non-AmeriFlux paper sites that need a fresh Copernicus CDS ERA5 point download by longitude/latitude, use era5-cds-point-download first.
日本語の概要は準備中です。原文の説明を表示しています。
Extract AmeriFlux BASE-BADM/BIF crop management records into EcoSIM-editable plant-management and soil-management Excel workbooks that can be converted to EcoSIM NetCDF files. Use when asked to derive EcoSIM planting, harvest, fertilizer, or tillage management inputs from AMF *_BIF_*.xlsx or BIF CSV files, especially for crop sites where management details live in GRP_DM_* records and DM_COMMENT fields.
日本語の概要は準備中です。原文の説明を表示しています。
Create hand-drawn style diagrams using Excalidraw JSON format. Generate .excalidraw files for architecture diagrams, flowcharts, sequence diagrams, concept maps, and more. Files can be opened at excalidraw.com or uploaded for shareable links.
日本語の概要は準備中です。原文の説明を表示しています。
Use when: User wants to run Archon workflows, CREATE workflows or commands, set up Archon, or manage Archon configuration. Triggers (run): "use archon to", "run archon", "archon workflow", "use archon for", "have archon", "let archon", "ask archon to". Triggers (create): "create a workflow", "write a workflow", "make a command", "author a workflow", "new workflow", "new command", "archon workflow yaml". Triggers (setup): "set up archon", "install archon", "how to use archon", "configure archon", "archon setup", "get started with archon". Triggers (config): "change my archon config", "modify archon config", "archon config", "change archon settings", "update my config", "help me change my config", "edit archon config", "archon configuration". Triggers (init): "initialize archon", "set up .archon", "archon init", "add archon to repo". Capability: Runs AI workflows in isolated git worktrees for parallel development. Also: Creates and manages workflow YAML files, command files, and configuration. NOT for: Direct Claude Code work - only for delegating to Archon CLI.
日本語の概要は準備中です。原文の説明を表示しています。
Use when the user wants a small, well-bounded change done now without a plan file — a bugfix, config change, rename, doc update or simple refactor touching 1–5 files — 'corrigir rapidinho', 'quick fix no X', 'renomear Y'. Presents a mini-plan, implements after approval, verifies and commits. Do NOT use for more than 5 files, architectural decisions, migrations or new UI flows (use feat-feature / feat-backend / feat-frontend).
日本語の概要は準備中です。原文の説明を表示しています。
Create comprehensive technical documentation including API docs, component libraries, README files, architecture diagrams, and developer guides using tools like JSDoc, Storybook, or Docusaurus. Use when documenting APIs, creating component documentation, writing README files, generating API references, documenting architecture decisions, creating onboarding guides, maintaining changelogs, documenting configuration options, or building developer documentation sites.
日本語の概要は準備中です。原文の説明を表示しています。
Parses, queries, converts, and extracts from GTF and GFF3 gene-model annotation files - walking the gene/transcript/exon/CDS hierarchy with gffutils (queryable SQLite DB), converting formats and extracting transcript/CDS/protein FASTA with gffread, slurping to dataframes with gtfparse/pyranges, and sanitizing malformed files with AGAT. Covers the 1-based-inclusive vs 0-based BED coordinate conversion (start-1 only), deriving implicit features (introns/UTRs/TSS), phase-not-frame, the stop-codon-in-or-out-of-CDS convention, and the chr1-vs-1 seqid and gene-ID-version mismatches that silently produce all-zero count matrices and dropped joins. Use when extracting features or sequences from an annotation, converting GTF<->GFF3 or GTF->BED, traversing the gene tree, or diagnosing a coordinate/provenance mismatch upstream of counting or DE.
日本語の概要は準備中です。原文の説明を表示しています。
Sort alignment files by coordinate or read name using samtools and pysam. Use when preparing BAM files for indexing, variant calling, or paired-end analysis.
日本語の概要は準備中です。原文の説明を表示しています。
Create and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to alignment files or fetching specific genomic regions.
日本語の概要は準備中です。原文の説明を表示しています。
集群数据管理 Skill —— 涵盖数据使用规范、压缩优化、数据共享（ACL）、文件扫描与清理、文件完整性校验、genozip 基因组压缩等全流程。Use when the user asks about: managing data on the HPC cluster, compressing genomic files (fq/bam/vcf), sharing data between users/groups, scanning for large files or cleaning up disk space, checking file integrity (md5/gzip/bam), using genozip, checking disk quota, or any data lifecycle management task on the NCPGR HPC cluster.
日本語の概要は準備中です。原文の説明を表示しています。
Use this skill when the user asks about Driver Qualification Files (DQF) — what must be in a DQ file under 49 CFR 391, retention periods, what's required pre-hire vs ongoing, document expiration tracking, audit-readiness for driver files, common DQF deficiencies that auditors find, or how to handle missing documents on existing drivers. Always cite the specific subsection of 49 CFR 391.
日本語の概要は準備中です。原文の説明を表示しています。