「kage」の検索結果

Extracts cfDNA fragmentomics features (DELFI genome-wide short/long ratios, WPS nucleosome positioning, Griffin GC-corrected accessibility profiles, end-motifs/MDS, OCF) for cancer detection and tissue-of-origin from plasma WGS. Centers on the nuclease-footprint reframe (every feature re-reads one nucleosome object), the mandatory GC correction, and the cross-protocol non-comparability that breaks naive classifiers. Runs FinaleToolkit (real CLI/Python, MIT) and the Griffin Snakemake pipeline; DELFI is a method, not a package. Use when deriving fragment-based signal from cfDNA, choosing a feature family for detection vs subtyping, or diagnosing why a fragmentomic model failed validation.

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Build clustered heatmaps for expression matrices and other features-by-samples data with rigorous distance/linkage/scaling choices, robust color mapping, optimal leaf ordering, and ComplexHeatmap/pheatmap/seaborn rendering. Covers the ward.D vs ward.D2 trap, the row-vs-column scaling decision, multi-track annotations, oncoPrint, and raster rendering for large matrices. Use when visualizing expression patterns across samples or identifying co-regulated clusters.

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Resolve the architecture of focal oncogene amplifications — extrachromosomal DNA (ecDNA), breakage-fusion-bridge (BFB) cycles, homogeneously staining regions (HSR), and linear amplification — from whole-genome sequencing with AmpliconArchitect, the AmpliconSuite pipeline, and AmpliconClassifier. Covers copy-number seed selection, breakpoint-graph reconstruction, balanced-flow optimization, ecDNA classification, and the limits of depth-only amplification calls. Use when a focal amplification needs structural characterization, when distinguishing ecDNA from chromosomal amplification, suspecting ecDNA-driven oncogene amplification or therapy resistance, or selecting copy-number seeds for amplicon reconstruction.

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Performs subgroup and heterogeneous treatment effect (HTE) analyses for clinical trials. Covers Mantel-Haenszel pooling, Breslow-Day, interaction tests in regression, RERI for additive interaction, modern data-adaptive HTE methods (STEPP, SIDES, causal forests, X/R-learners), Bayesian shrinkage (Dixon-Simon, MAP, EXNEX), graphical multiplicity (Bretz-Maurer), and credibility frameworks (Sun BMJ, EMA 2019). Use when analyzing treatment effects across patient subgroups for regulatory submissions or precision-medicine claims.

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Create a reusable SkillPack from a successful completed task. Use when the user wants to convert a one-off research, coding, analysis, or content workflow into a distributable local SkillPack with `skillpack.json`, local skills under `skills/`, starter prompts, start scripts, and an optional zip package.

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Configures and enforces SwiftLint in Swift projects using build tool plugins, run scripts, and CI. Covers .swiftlint.yml configuration, disabled_rules, opt_in_rules, only_rules, analyzer_rules, baselines, autocorrect, swiftlint:disable suppressions, reporter formats (sarif, json, checkstyle), strict and lenient modes, SwiftLintBuildToolPlugin via SimplyDanny/SwiftLintPlugins, swift package plugin swiftlint, Xcode run script phases, CI integration, multiple configuration files, and rollout strategies for existing codebases. Use when setting up SwiftLint, configuring lint rules, suppressing warnings, creating baselines, choosing between build tool plugin and run script, or integrating SwiftLint into CI.

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Integrate Core ML models in iOS apps for on-device machine learning inference. Covers model loading (.mlmodel, .mlpackage, .mlmodelc), predictions with auto-generated classes and MLFeatureProvider, compute unit configuration (CPU, GPU, Neural Engine), MLTensor, VNCoreMLRequest, MLComputePlan, multi-model pipelines, and deployment strategies. Use when loading Core ML models, making predictions, configuring compute units, or profiling model performance.

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Build, debug, or review Cloudflare Agents SDK applications using the agents package.

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Build or maintain Cloudflare Sandbox apps on the stable @cloudflare/sandbox package. Use sandbox-next for preview apps and sandbox-migrate-to-next for stable-to-preview migrations.

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Analyze signal spectra in MATLAB using nonparametric and parametric estimators. Use when computing frequency content, PSD, power spectrum, spectral peaks, bandwidth, or streaming spectral analysis. Covers pspectrum, pwelch, periodogram, pmtm, pburg, pmusic, rootmusic, plomb, poctave, spectrumAnalyzer, dsp.SpectrumEstimator. TRIGGER: FFT, PSD, power spectrum, spectral analysis, frequency content, bandwidth measurement, spectral leakage, window selection, streaming spectrum, periodicity, resolve close frequencies, multitaper. DO NOT TRIGGER: filter design, spectrogram/time-frequency, audio features.

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Discover, configure, and connect to Arduino boards from MATLAB using the Arduino Support Package. Use this skill when the user wants to set up an Arduino board, connect to Arduino hardware, find connected boards, scan serial ports, configure Arduino libraries, or any task that requires an Arduino connection as a prerequisite (e.g., blink LED, read sensor, read digital pin, read analog pin, write pin, plot sensor data, scan I2C, use ultrasonic sensor, control servo, read temperature, read voltage, data logging from hardware). Triggers on: arduino, board setup, COM port, serial port, hardware connection, Arduino Nano, Arduino Uno, Arduino Mega, Arduino Micro, Grove, sensor setup, I2C scan, ultrasonic, servo, readDigitalPin, writeDigitalPin, readVoltage, writePWMVoltage, temperature sensor, air pressure, pin read, pin write, analog input.

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Connect to and acquire images from cameras in MATLAB using Image Acquisition Toolbox. Use this skill when the user wants to: use a webcam, acquire images, capture video, stream from a camera, connect to a GigE Vision camera, preview live video, list available cameras, configure camera properties, use a CoaXPress frame grabber, or use a Camera Link frame grabber. Covers USB webcams, GigE Vision, USB3 Vision, CoaXPress, Camera Link, and GenICam-compliant cameras. Always prefer videoinput from Image Acquisition Toolbox over webcam support package or gigecam.

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Read BEFORE troubleshooting or enhancing camera image quality. Diagnoses and enhances image quality from cameras connected via Image Acquisition Toolbox or USB Webcams support package. Discovers camera capabilities at runtime, analyzes captured images for quality issues (brightness, contrast, sharpness, noise, color balance, backlighting), suggests hardware setting adjustments tailored to the specific camera, and applies Image Processing Toolbox enhancement functions. Use when a user wants to improve camera image quality, troubleshoot dark/blurry/noisy/grainy/ overexposed/washed out/color cast images, or optimize camera settings.

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Import Gerber, ODB++, Allegro .brd, .mcm files for PCB boards and IC packages. Inspect nets, layers, shapes, and stackups. TRIGGER: user asks to import, read, or open a PCB layout file. Gerber files use gerberRead or PCBReader; ODB++, Allegro .brd, .mcm, and native formats use pcbFileRead. Also when inspecting nets, layers, components, or stackups from an imported board. Invoke BEFORE writing import code — the query API (cadnet, cadnetList, componentList) is specialized. SKIP: EM analysis or S-parameter extraction (use matlab-analyze-em), PDN/IR-drop analysis (use matlab-analyze-pcb-pdn), building custom geometry (use matlab-assemble-pcb-layout), material/stackup definition only (use matlab-manage-pcb-material).

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Use when the user wants to use Arduino sensors or peripherals from MATLAB that are not directly supported by the MATLAB Support Package for Arduino Hardware. Triggers on requests to create, wrap, or expose a custom Arduino library to MATLAB. Also triggers on indirect questions like "How do I read humidity in MATLAB?" or "How do I display text on an LCD from MATLAB?" where the answer requires a custom Arduino add-on library. Covers: custom addon creation, third-party Arduino library integration, LibraryBase class, C++ header files, DependentLibraries, arduinoioaddons namespace, I2C/SPI/GPIO peripheral wrappers.

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Call Python libraries from MATLAB using the py. interface, pyrun, pyrunfile, or pyenv. Use when writing or executing MATLAB code that calls Python functions or passes data between MATLAB and Python. REQUIRED when triaging Python errors from MATLAB (ModuleNotFoundError, ImportError, "Unable to resolve the name 'py.*'"). REQUIRED when setting up Python environments for MATLAB, creating virtual environments, or installing Python packages for use with MATLAB.

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Generate Euro NCAP test scenarios and variants using the ADT Euro NCAP support package. Use when creating NCAP seed scenarios, generating variants, translating between drivingScenario and RoadRunner, plotting scenario descriptors, computing NCAP scores, or exporting reports. Triggers on: ncapScenario, euroAssessment, getScenario, getScenarioDescriptor, generateVariants, ScenarioDescriptor, ScenarioDescriptorPlot, ncapScore, ncapReport, exportReport, configureVUT, assessmentTable, Euro NCAP, CCRs, CCRm, CCRb, CCFtap, CCCscp, CPNA, CPFA, CBNA, variant generation.

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Creates MATLAB interfaces to Python image processing and computer vision models from GitHub repositories or pip-installable packages using MPyReq. Use when asked to interface MATLAB with a Python CV/image model (segmentation, depth estimation, object detection, image generation, super-resolution, etc.), given a GitHub repo URL for an image/vision model, or asked to create an MPyReq demo for a deep-learning vision pipeline. Do NOT use for general-purpose Python-MATLAB interfacing, non-vision models (NLP, tabular, audio), model deployment/serving, or MATLAB-only image processing workflows.

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Scan container images for vulnerabilities using Trivy, Grype, and cloud-native tools. Identify security issues in base images, packages, and configurations. Use when implementing container security, building secure images, or meeting compliance requirements.

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Scan package dependencies for known vulnerabilities using Snyk, Dependabot, and OWASP Dependency-Check. Identify and remediate vulnerable libraries in your software supply chain. Use when managing third-party dependencies or implementing software composition analysis.

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Detect, respond to, and prevent software supply chain attacks on package registries, container images, and CI/CD pipelines with lockfile auditing, provenance verification, and emergency response playbooks.

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System administration for Linux servers. Manage packages, services, and system configuration. Use when administering Linux systems.

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Create, manage, and deploy Helm charts for Kubernetes package management. Build reusable chart templates, manage releases, configure values, and use Helm repositories. Use when packaging Kubernetes applications or managing K8s deployments with Helm.

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Reconcile App Store Connect subscriptions and in-app purchases with RevenueCat products, entitlements, offerings, and packages using asc and RevenueCat MCP. Use when setting up or syncing subscription catalogs across ASC and RevenueCat.

日本語の概要は準備中です。原文の説明を表示しています。