「eq」の検索結果

Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning-based single-cell method. Triggers include mentions of scVI, scANVI, totalVI, PeakVI, MultiVI, DestVI, veloVI, sysVI, scArches, variational autoencoder, VAE, batch correction, data integration, multi-modal, CITE-seq, multiome, reference mapping, latent space.

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Standardize PRD discovery and drafting for product scope, user outcomes, requirement IDs, and acceptance criteria. Use when creating PRD, product requirements, feature specification, or acceptance criteria plan.

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This skill should be used only when the user explicitly asks to use `$ralph-specum-requirements`, or explicitly asks Ralph Specum in Codex to run the requirements phase.

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Prepare R packages for CRAN submission by checking for common ad-hoc requirements not caught by devtools::check(). Use when: (1) Preparing a package for first CRAN release, (2) Preparing a package update for CRAN resubmission, (3) Reviewing a package to ensure CRAN compliance, (4) Responding to CRAN reviewer feedback. Covers documentation requirements, DESCRIPTION field standards, URL validation, examples, and administrative requirements.

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Rigorously review code or pull requests for correctness, security, accessibility, maintainability, tests, and edge cases. Use when users request a critical code review, want a guided walkthrough of findings, need implementer-facing feedback, or want to prepare, create, or submit a GitHub pull request review.

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Watches an open pull request's CI until green and fixes failing checks. TRIGGER when: the user wants to watch a pull request's CI, babysit a PR until it goes green, or fix failing CI checks on an open PR. DO NOT TRIGGER when: opening the PR in the first place → pr; rebasing the branch onto its base → rebase.

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Opens a pull request, publishing the current branch as a PR. TRIGGER when: the user wants to open a pull request, publish the current branch as a PR, or take the current work through to an open PR. DO NOT TRIGGER when: only committing changes → commit; babysitting CI after the PR is already open → monitoring-pull-requests.

日本語の概要は準備中です。原文の説明を表示しています。

One-prompt autonomous product design and implementation. Use automatically for broad greenfield UI requests such as 'from scratch', '새 제품/화면을 알아서 만들어줘', or requests that delegate DESIGN.md creation. It decides whether to reuse, establish, refresh, or skip a project design system; asks at most one consequential question batch; then builds and verifies the real surface. Use omd:harness instead only when the user explicitly asks for guided checkpoints.

日本語の概要は準備中です。原文の説明を表示しています。

One-prompt autonomous product design and implementation. Use automatically for broad greenfield UI requests such as 'from scratch', '새 제품/화면을 알아서 만들어줘', or requests that delegate DESIGN.md creation. It decides whether to reuse, establish, refresh, or skip a project design system; asks at most one consequential question batch; then builds and verifies the real surface. Use omd:harness instead only when the user explicitly asks for guided checkpoints.

日本語の概要は準備中です。原文の説明を表示しています。

Route C# and .NET requests to the exact installed specialist or smallest dotnet/skills marketplace plugin. USE FOR: "which specialist should own this" or "how do I add the skill" requests involving ASP.NET Core endpoints, Blazor, MAUI binding, Windows Forms specialist selection or installation, EF Core queries, test or framework migration, runtime CPU/allocation evidence, file-based C#, editor/compiler defects, a surviving MSBuild `.binlog`, or a plugin missing from `/skills`; also use for C# semantics when no narrower specialist exists. DO NOT USE FOR: requests that already name the exact installed specialist to invoke, or work unrelated to C# or .NET.

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ACTIVATION PREREQUISITE: the request or discovered target must explicitly identify C#, .NET, `.cs`, or `.csproj`; otherwise stay dormant without invoking this skill. USE FOR: locating System.DateTime.Now/UtcNow, System.IO.File/Directory, System.Environment, HttpClient, Console, or Process usage in C#; auditing C# code for hard-to-test framework dependencies; or verifying those C# calls are already abstracted. DO NOT USE FOR: any target lacking the activation prerequisite; generating wrappers (use generate-testability-wrappers); migrating code (use migrate-static-to-wrapper); or general code review.

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Structured requirements elicitation for analysis requests. Use when scoping new analysis projects, clarifying ambiguous business questions, or documenting analysis acceptance criteria with stakeholders.

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Query and answer questions about Volcengine API specifications. Trigger this skill whenever a user asks about Volcengine API parameters, error codes, request methods, enum values, required fields, response structures, pagination, parameter dependencies, or API comparisons — even if they don't explicitly say "API". Typical triggers include questions like "What parameters does DescribeInstances have?", "What values does Status support?", "What does InvalidInstanceId.NotFound mean?", "Does Volcengine have a batch tag deletion API?", "Which APIs does ECS support?", "How do I pass parameters to CreateDatabase?", "Is ChargeType required?", "What fields does DescribeInstances return?", "How do I paginate instance lists?", "What's the difference between these two APIs?", "RunInstances returns InvalidParameterValue". When the user needs runnable SDK code, hand off to the volcengine-sdk-generator skill. When the user needs CLI-based operations, hand off to the volcengine-cli skill. Supports both Chinese and English prompts.

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Use when you need to design, review, or improve validation in Spring Boot applications — including Bean Validation on request DTOs, @Valid/@Validated at API boundaries, constraint groups, custom constraints, @ConfigurationProperties validation, nested DTO validation, and consistent validation error handling. This should trigger for requests such as Add validation support in Spring Boot; Review Spring Boot validation rules; Improve request validation in Spring Boot REST APIs; Add custom Bean Validation constraints in Spring Boot; Validate configuration properties in Spring Boot. Part of Plinth Toolkit

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Use when you need to generate Java project diagrams — including UML sequence diagrams, UML class diagrams, C4 model diagrams, UML state machine diagrams, UML Deployment Diagrams, ER (Entity Relationship) diagrams, and bounded-context diagrams — through a modular, step-based interactive process that adapts to your specific visualization needs. This should trigger for requests such as Generate UML diagram; Create sequence diagram; Create class diagram; Create state machine diagram; Create deployment diagram; Create C4 diagram; Create bounded-context diagram; Create context-map diagram. Part of Plinth Toolkit

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Build personalized cold outreach sequences for LinkedIn and email. Use when someone needs to reach prospects, warm up cold leads, or build a systematic outreach engine. Covers research, connection requests, follow-ups, and conversion.

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NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

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Diagrams and checkable docs from a codebase. Draws ERDs, C4 context/container/component views, API endpoint catalogues, lifecycle/state machines, sequence diagrams, and service-to-service call maps as a validated JSON spec plus a standalone HTML viewer, with Mermaid export. Imports OpenAPI, GraphQL SDL and Prisma; otherwise reads the code (NestJS, TypeORM, Express) and writes the spec. Use for: database diagram, ERD, data model, table relationships, C4 or architecture diagram, system context, API map, endpoint list, "show me the endpoints", status flow, state machine, allowed transitions, "what happens after X is approved", sequence diagram, request flow, how services call each other, microservice map, Mermaid diagram. Also writes documentation as a fact graph: each statement carries its source and a computed confidence, and a drift check fails CI when the code moves. Use to document a system, write architecture or onboarding docs, or explain how a system works.

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Draft Project Manual specification sections from accepted project requirements using CSI MasterFormat identities, three-part sections and review flags. Use for design requirements; use product-cut-sheet for source-faithful product entries and epd-to-spec for EPD requirements.

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Ultra-fast RNA-seq transcript/gene quantification via quasi-mapping (no BAM). Builds a k-mer index from transcriptome FASTA, quantifies in minutes. Outputs TPM/count tables (quant.sf) with optional GC- and sequence-bias correction. Integrates with tximeta/tximport for DESeq2/edgeR. Use STAR when a genome-aligned BAM is needed.

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Bulk RNA-seq DE with PyDESeq2: load counts, normalize, fit negative binomial models, Wald test (BH-FDR), LFC shrinkage, volcano/MA plots. Use for two-group comparisons, multi-factor designs with batch correction, multiple contrasts.

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scRNA-seq with Scanpy: QC, normalization, HVG selection, PCA, neighborhood graph, UMAP/t-SNE, Leiden clustering, markers, cell annotation, trajectory inference. Standard scRNA-seq exploration.

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Query UCSC Genome Browser REST API for DNA sequences, tracks, gene models, and conservation across 100+ assemblies. Retrieve sequence by region, list/fetch BED/bigWig tracks, chromosome sizes, RefSeq/GENCODE gene structures, PhyloP/PhastCons scores. Use for UCSC annotations; Ensembl REST API for Ensembl gene IDs and VEP variant annotation.

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Query RCSB PDB (200K+ structures) via the public REST + GraphQL APIs with plain `requests` (no SDK). Search by text, attribute, sequence, or 3D structure similarity (Search API); retrieve metadata via GraphQL (Data API); download PDB/mmCIF from files.rcsb.org. For AlphaFold predictions use alphafold-database-access; for protein sequences only use uniprot-protein-database.

日本語の概要は準備中です。原文の説明を表示しています。