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Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions.

日本語の概要は準備中です。原文の説明を表示しています。

Process and analyze single-cell ATAC-seq data with Signac, ArchR, SnapATAC2, or Cell Ranger ATAC. Use when handling 10X scATAC or 10X Multiome (paired RNA+ATAC) data, performing per-cell QC, choosing between ArchR/Signac/SnapATAC2 ecosystems, building per-cluster consensus peaksets, integrating with paired scRNA-seq, doublet detection (AMULET vs ArchR vs scDblFinder), or running pseudobulk differential accessibility per cluster.

日本語の概要は準備中です。原文の説明を表示しています。

Perform multiple sequence alignment using MAFFT, MUSCLE5, ClustalOmega, or T-Coffee. Guides tool and algorithm selection based on dataset size, sequence divergence, and downstream application. Use when aligning three or more homologous sequences for phylogenetics, conservation analysis, or evolutionary studies.

日本語の概要は準備中です。原文の説明を表示しています。

Track and report progress of a request to create and run an EcoSIM case for a site ("create an ecosim run for site US-UMB", "set up and run EcoSIM at <site>"). Records four stages — data preparation, namelist creation, model simulation, and output evaluation — in result/<SITE_ID>/progress.json and PROGRESS.md, derives step status from files and quality reports on disk, and records manual results such as the executable, test run, and evaluation verdicts. Use at the start of such a request, after each stage, and whenever the user asks where a site run stands.

日本語の概要は準備中です。原文の説明を表示しています。

Provides patterns to generate comprehensive REST API documentation using SpringDoc OpenAPI 3.0 and Swagger UI in Spring Boot 3.x applications. Use when setting up API documentation, configuring Swagger UI, adding OpenAPI annotations, implementing security documentation, or enhancing REST endpoints with examples and schemas.

日本語の概要は準備中です。原文の説明を表示しています。

Provides Spring Data Neo4j integration patterns for Spring Boot applications. Use when you need to work with a graph database, Neo4j nodes and relationships, Cypher queries, or Spring Data Neo4j. Creates node entities with @Node annotation, defines relationships with @Relationship, writes Cypher queries using @Query, configures imperative and reactive Neo4j repositories, implements graph traversal patterns, and sets up testing with embedded databases.

日本語の概要は準備中です。原文の説明を表示しています。

Generates Spring Boot 3.x configurations, creates REST controllers, implements Spring Security 6 authentication flows, sets up Spring Data JPA repositories, and configures reactive WebFlux endpoints. Use when building Spring Boot 3.x applications, microservices, or reactive Java applications; invoke for Spring Data JPA, Spring Security 6, WebFlux, Spring Cloud integration, Java REST API design, or Microservices Java architecture.

日本語の概要は準備中です。原文の説明を表示しています。

Provides patterns to configure Spring Boot Actuator for production-grade monitoring, health probes, secured management endpoints, and Micrometer metrics across JVM services. Use when setting up monitoring, health checks, or metrics for Spring Boot applications.

日本語の概要は準備中です。原文の説明を表示しています。

Use when writing tests of any kind — unit, slice, or integration. Covers test structure, naming conventions, Mockito patterns, @WebMvcTest, @DataJpaTest, and Testcontainers setup.

日本語の概要は準備中です。原文の説明を表示しています。

Integrate and maintain Robelest Convex Auth in apps by always checking upstream before implementation. Use when adding auth setup, updating auth wiring, migrating between upstream patterns, or troubleshooting @robelest/convex-auth behavior across projects.

日本語の概要は準備中です。原文の説明を表示しています。

One-time setup that gathers design context for your project and saves it to your AI config file. Run once to establish persistent design guidelines.

日本語の概要は準備中です。原文の説明を表示しています。

Integrate Convex static self hosting into existing apps using the latest upstream instructions from get-convex/self-hosting every time. Use when setting up upload APIs, HTTP routes, deployment scripts, migration from external hosting, or troubleshooting static deploy issues across React, Vite, Next.js, and other frontends.

日本語の概要は準備中です。原文の説明を表示しています。

Combine React's official "You Might Not Need an Effect" guidance with this project's stricter no direct useEffect stance. Use when writing, reviewing, or refactoring React components that might reach for useEffect, derived state, event relays, reset logic, subscriptions, or client fetching.

日本語の概要は準備中です。原文の説明を表示しています。

Creates or adds Convex to an app. Use for new Convex projects, npm create convex@latest, frontend setup, env vars, or the first npx convex dev run.

日本語の概要は準備中です。原文の説明を表示しています。

Improves typography by fixing font choices, hierarchy, sizing, weight, and readability so text feels intentional. Use when the user mentions fonts, type, readability, text hierarchy, sizing looks off, or wants more polished, intentional typography.

日本語の概要は準備中です。原文の説明を表示しています。

Sync the current machine's configuration into the dotfiles repo and update the React showcase page. Use this skill whenever the user says "sync dotfiles", "update dotfiles", "sync config", "actualizar dotfiles", "sincronizar config", "update the repo with my current setup", or anything about pulling their current machine state into the dotfiles repo. Also trigger when the user mentions updating the toolkit page, adding new tools to the page, syncing Claude Code or Codex config (AGENTS.md, codex agents/skills/hooks), or keeping the dotfiles repo in sync with what's actually installed.

日本語の概要は準備中です。原文の説明を表示しています。

Read this skill before the first step of any request to do something in an app on the person's own computer (Notes, Finder, System Settings, any desktop app), to look at their screen, or for "computer use". Computer use (desktop control) lets Claude take screenshots of the person's desktop and control it with clicks, typing and scrolling through the Claude desktop app; its tools are named mcp__computer-use__* when the session runs in the desktop app and mcp__remote-devices__computer_* when a cloud session is linked to the person's computer; before computer use is turned on for a conversation there may be no such tools, only an enable__mcp__remote-devices__computer tool, which turns it on. It covers turning it on, picking the right tool, the access flow, and the safety rules for tiered apps, links and financial actions. It is not for websites, which go through Claude in Chrome or the built-in browser and their own skills.

日本語の概要は準備中です。原文の説明を表示しています。

Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks.

日本語の概要は準備中です。原文の説明を表示しています。

Azure Resource Manager SDK for Bot Service in .NET. Management plane operations for creating and managing Azure Bot resources, channels (Teams, DirectLine, Slack), and connection settings.

日本語の概要は準備中です。原文の説明を表示しています。

Azure AI Search SDK for Python. Use for vector search, hybrid search, semantic ranking, indexing, and skillsets.

日本語の概要は準備中です。原文の説明を表示しています。

Azure Monitor OpenTelemetry Distro for Python. Use for one-line Application Insights setup with auto-instrumentation.

日本語の概要は準備中です。原文の説明を表示しています。

Azure Key Vault Secrets SDK for Rust. Use for storing and retrieving secrets, passwords, and API keys. Triggers: "keyvault secrets rust", "SecretClient rust", "get secret rust", "set secret rust".

日本語の概要は準備中です。原文の説明を表示しています。

Azure AI Projects SDK for Java. High-level SDK for Azure AI Foundry project management including connections, datasets, indexes, and evaluations.

日本語の概要は準備中です。原文の説明を表示しています。

Azure AI Projects SDK for .NET. High-level client for Azure AI Foundry projects including agents, connections, datasets, deployments, evaluations, and indexes.

日本語の概要は準備中です。原文の説明を表示しています。