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This package is a implementation of biclustering ensemble method MoSBi (Molecular signature Identification from Biclustering). MoSBi provides standardized interfaces for biclustering results and can combine their results with a multi-algorithm ensemble approach to compute robust ensemble biclusters on molecular omics data. This is done by computing similarity networks of biclusters and filtering for overlaps using a custom error model. After that, the louvain modularity it used to extract biclus

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Client for the gypsum REST API (https://gypsum.artifactdb.com), a cloud-based file store in the ArtifactDB ecosystem. This package provides functions for uploads, downloads, and various adminstrative and management tasks. Check out the docu

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基于 TrailSnap（行影集）现有设计系统设计、实现和审查前端 UI。适用于 package/website 的新页面、组件、布局、主题、移动端适配与界面改版；纯后端任务和其他项目不适用。

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Universal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover letters, invoices, academic papers, theses/dissertations, academic CVs, presentations (Beamer), scientific posters, formal letters, exams/quizzes, books, cheat sheets, reference cards, exam formula sheets, fillable PDF forms (hyperref form fields), conditional content (etoolbox toggles), mail merge from CSV/JSON (Jinja2 templates), version diffing (latexdiff), charts (pgfplots + matplotlib), tables (booktabs + CSV import), images (TikZ), Mermaid diagrams, AI-generated images, watermarks, landscape pages, bibliography/citations (BibTeX/biblatex), multi-language/CJK (auto XeLaTeX), algorithms/pseudocode, colored boxes (tcolorbox), SI units (siunitx), Pandoc format conversion (Markdown/DOCX/HTML ↔ LaTeX), and PDF-to-LaTeX conversion of handwritten or printed documents (math, business, legal, general). Compile script supports pdflatex, xelatex, lualatex with auto-detection, latexmk backend, texfot log filtering, PDF/A output, and verbosity control (--verbose/--quiet). Empirically optimized scaling: single agent 1-10 pages, split 11-20, batch-7 pipeline 21+. Use when user asks to: (1) create a resume/CV/cover letter, (2) write a LaTeX document, (3) create PDF with tables/charts/images, (4) compile a .tex file, (5) make a report/invoice/presentation, (6) anything involving LaTeX or pdflatex, (7) convert/OCR a PDF to LaTeX, (8) convert handwritten notes, (9) create charts/graphs/diagrams, (10) create slides, (11) write a thesis or dissertation, (12) create an academic CV, (13) create a poster, (14) create an exam/quiz, (15) create a book, (16) convert between document formats (Markdown, DOCX, HTML to/from LaTeX), (17) generate Mermaid diagrams for LaTeX, (18) create a formal business letter, (19) create a cheat sheet or reference card, (20) create an exam formula sheet or crib sheet, (21) condense lecture notes/PDFs into a cheat sheet, (22) create a fillable PDF form with text fields/checkboxes/dropdowns, (23) create a document with conditional content/toggles (show/hide sections), (24) generate batch/mail-merge documents from CSV/JSON data, (25) create a version diff PDF (latexdiff) highlighting changes between documents, (26) create a homework or assignment submission with problems and solutions, (27) create a lab report with data tables, graphs, and error analysis, (28) encrypt or password-protect a PDF, (29) merge multiple PDFs into one, (30) optimize/compress a PDF for web or email, (31) lint or check a LaTeX document for common issues, (32) count words in a LaTeX document, (33) analyze document statistics (figures, tables, citations), (34) fetch BibTeX from a DOI, (35) convert a Graphviz .dot file to PDF/PNG, (36) convert a PlantUML .puml file to PDF/PNG, (37) create a one-pager/fact sheet/executive summary, (38) create a datasheet or product specification sheet, (39) extract pages from a PDF (page ranges, odd/even), (40) check LaTeX package availability before compiling, (41) analyze citations and cross-reference with .bib files, (42) debug LaTeX compilation errors, (43) make a document accessible (PDF/A, tagged PDF), (44) create lecture notes or course handouts, (45) fill an existing PDF form (fillable fields or non-fillable with annotations), (46) extract text or tables from a PDF (pdfplumber, pypdf), (47) OCR a scanned PDF to text (pytesseract), (48) create a PDF programmatically with reportlab (Canvas, Platypus), (49) rotate or crop PDF pages (pypdf), (50) add a watermark to an existing PDF, (51) extract metadata from a PDF (title, author, subject).

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Check dependencies for known vulnerabilities using npm audit, pip-audit, etc. Use when package.json or requirements.txt changes, or before deployments. Alerts on vulnerable dependencies. Triggers on dependency file changes, deployment prep, security mentions.

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Expert knowledge for Azure Artifacts development including best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when managing feeds, upstream sources, .npmrc auth, GitHub Actions CI/CD, or package retention limits, and other Azure Artifacts related development tasks. Not for Azure DevOps (use azure-devops), Azure Pipelines (use azure-pipelines), Azure Repos (use azure-repos), Azure Boards (use azure-boards).

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Use RightStack as a read-only Web3 stack advisor for architecture recommendations, workflow inspection, tool comparisons, and package-migration checks. Use for planning; do not treat corpus output as implementation proof.

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Package one of this agent's own skills as a standalone community pack and submit it to the aeon registry as a PR

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Decide whether to add, keep, or remove a dependency. Use before adding any package.

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Turn a completed task, browser flow, artifact pipeline, failure-recovery trace, or repeatedly refined workflow into a new reusable skill package or a reviewed skill-design plan. Use when the user asks to make a new skill from real run history, extract a reusable workflow from conversation/logs/files, summarize lessons into a new skill, or produce a plan before writing files. Do not use to upgrade an existing skill or to execute the business workflow itself.

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Use when the user mentions the Higgsfield CLI (binaries `higgsfield` / `higgs` / `hf`, `higgsfield auth login`, `higgsfield generate create`, `higgsfield workflow`, the `@higgsfield/cli` npm package), the Higgsfield MCP custom connector (`mcp.higgsfield.ai/mcp`) or its bundled workflows (`get_workflow_instructions` — character-sheet, thumbnail-generation, ugc-* videos, faceless-video, narrator, subtitles, product-photoshoot, brand-asset-creation, ad-multiplier, video-editing / Higgsedit, website-builder-flow), Higgsfield's bundled skills repo (`higgsfield-ai/skills` — `higgsfield-generate`, `higgsfield-soul-id`, `higgsfield-product-photoshoot`, `higgsfield-brandkit`, `higgsfield-marketplace-cards`, `higgsfield-websites`, `higgsfield-video-explainer`, `higgsfield-youtube-thumbnail`, invoked as `/higgsfield:generate` etc.), or asks how this skill coexists with those tools (`do I need both`, `how does this work with the CLI/MCP/skills`, `should Higgsfield's workflow do this or you`).

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Evaluate whether a Stripe dispute is economical to contest, then gather evidence and submit only when approved. Use for Stripe disputes, chargebacks, counter-disputes, evidence packages, or Stripe dispute IDs.

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Turn a repeatable AI prompt or workflow into a structured, shareable skill for the affiliate-skills GitHub repository. Use this skill when the user wants to create a new skill, write a SKILL.md, convert a prompt to a skill, share a skill via the GitHub repo, or document an AI workflow. Also trigger for: "create a skill", "write a skill", "make this a skill", "turn this into a skill", "publish skill", "add skill to list", "write SKILL.md", "skill from prompt", "document this workflow", "package this as a skill".

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Scaffold a ready-made AI agent harness in one command from the 19 published @metaharness/* example packages — 9 host integrations (Claude Code, Codex, Hermes, pi.dev, OpenClaw, RVM, Copilot, OpenCode, GitHub Actions) + 10 vertical pods (devops, research, trading, support, legal, coding, education, sales, gaming, repo-maintainer).

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Use when setting up providers, consuming state, optimizing rebuilds, using ProxyProvider, or migrating from deprecated providers (Provider package).

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Use after every code change, after writing tests, or before marking a task complete, and when the user says verify, quality gate, or audit code. Runs a 7-category mechanical check for TDZ, import, dead code, and mock leakage bugs.

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Weekdays. Works the next ready card on the board, one card per run, and assembles what it needs as a complete local file ready to paste: a campaign build sheet, a negative keyword file, a conversion action specification, an audience definition, or an upload packet. The whole step happens in a text editor until you release the ad account in RELEASES.md, and then Step 6a publishes the approved package through a connection you already have and writes a receipt for every id the platform returns.

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Weekdays, browser only when the card needs one. Takes the next ready cards off the launch board and does the work each one names: stages copy into the dashboard, fills a directory or press form and leaves it open in its tab, verifies a setup, packages a handoff, or researches its own next targets. It ticks its own card the moment it has verified the file that closes it. It submits only where you released the channel, sends only where you released the channel, spends only where you released it, and never touches a credential.

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Queues a deferred self-update of nwave-ai. Writes a PendingUpdateFlag that the SessionStart hook replays on the next Claude Code launch, so the current session is not interrupted. Falls back to manual instructions when the package manager cannot be detected.

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Use when a PERSONAL brand needs to make money — three funnel versions for founder, coach, and creator, an offer ladder from free to low to mid to high ticket, pricing psychology, inbound versus outbound outreach, and brand deal and sponsorship negotiation, with tax and legal variants for US LLC, EU per country, SEA Pte Ltd, and LATAM MEI. Trigger on 'monetize my personal brand', 'offer ladder', 'launch my course', 'coaching packages', 'sponsorship rates', 'I have an audience and no income'. Not for — a company product offer, see `31-offer-design-global` and `17-pricing-strategy-global`; the strategy that comes first, see `23-personal-brand-strategy-global`; running the community, see `28-community-building-global`.

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Bootstrap project-specific Trellis coding specs with a platform-neutral single-agent workflow. Use when creating or refreshing .trellis/spec guidelines, analyzing a codebase with GitNexus, ABCoder, or source inspection, decomposing package/layer spec work, and writing real codebase-backed spec docs without placeholder text.

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Create, revise, validate, or package Bot Generator Bot agent specifications and runnable MetaHarness agents using its CLI or MCP. Use for this repository's agent creation workflow, not unrelated chatbot products.

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Secure Python services against secret leakage, injection, unsafe subprocess calls, and dependency drift. Use when handling env vars, tokens, SQL, file paths, shell commands, auth flows, or Python security gates.

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Secure Next.js App Router with middleware auth, Server Action validation, CSP headers, and taint APIs. Use when adding authentication middleware, validating Server Action inputs with Zod, or preventing secret leakage to client bundles.

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