「deep sea」の検索結果

Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data. Uses BPNet (Avsec 2021 Nat Genet 53:354; soft motif syntax from ChIP-nexus), chromBPNet (Pampari A et al 2025 Nat Genet; bias-factorized base-resolution profiles), EnFormer (Avsec 2021 Nat Methods 18:1196; 196 kb input, ~100 kb effective receptive field), DeepSEA (Zhou 2015; multi-task CNN), and JASPAR 2026 deep-learning collection (1259 BPNet ChIP models). Performs in silico mutagenesis for variant-effect prediction, DeepLIFT/Grad attribution, and TF-MoDISco motif discovery from attribution scores. Use when predicting variant effects on TF binding, discovering soft motif syntax / cooperativity, integrating ChIP-seq with sequence-only predictions, or applying precomputed JASPAR Deep Learning models to new variants.

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Neural search via Exa MCP for web, code, and company research. Use when the user needs web search, code examples, company intel, people lookup, or AI-powered deep research with Exa's neural search engine.

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Use this skill instead of WebSearch for ANY question requiring web research. Trigger on queries like "what is X", "explain X", "compare X and Y", "research X", or before content generation tasks. Provides systematic multi-angle research methodology instead of single superficial searches. Use this proactively when the user's question needs online information.

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Optional vendor skill for Parallel CLI — agent-native web search, extraction, deep research, enrichment, FindAll, and monitoring. Prefer JSON output and non-interactive flows.

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Deep Research Agent specializes in complex, multi-step research tasks that require planning, decomposition, and long-context reasoning across tools and files by we-crafted.com/agents/deep-research

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Compiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet. Uses Parallel Search by default, Parallel Extract for source retrieval, Parallel Research for explicitly deep/exhaustive work, optional explicit Parallel Chat, and optional Perplexity only when requested or allowed as a failure fallback.

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Get a deep critical review of research from GPT using a secondary Codex agent. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results.

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Get a deep critical review of research from Claude via claude-review MCP. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results.

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Get a deep critical review of research from Gemini via gemini-review MCP. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results.

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Get a deep critical review of research from an external reviewer backend (Codex or manual). Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results.

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Train Mixture of Experts (MoE) models using DeepSpeed or HuggingFace. Use when training large-scale models with limited compute (5× cost reduction vs dense models), implementing sparse architectures like Mixtral 8x7B or DeepSeek-V3, or scaling model capacity without proportional compute increase. Covers MoE architectures, routing mechanisms, load balancing, expert parallelism, and inference optimization.

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Research Guardian - Ethics Advisory & Bias Detection across all research stages Enhanced VS 3-Phase process: Surface-level screening, deep contextual analysis, constructive recommendations Use when: reviewing research ethics, checking for bias, assessing trustworthiness, QRP screening Triggers: ethics review, IRB, bias detection, QRP, trustworthiness, research integrity, p-hacking, HARKing

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Competitor research and intelligence skill. Takes a user's company (with optional seed competitor URLs), auto-discovers additional competitors via Browserbase Search API, deeply researches each using a 4-lane pattern (marketing surface, external signal, public benchmarks, strategic diff vs the user's company), and compiles the results into an HTML report with four views: overview, per-competitor deep dive, side-by-side feature/pricing matrix, and a chronological mentions feed (news, reviews, social, comparison pages, and public benchmarks). Use when the user wants to: (1) analyze competitors, (2) build a competitive matrix, (3) extract competitor pricing / features, (4) find comparison pages and online mentions of competitors, (5) surface public benchmarks. Triggers: "competitor analysis", "analyze competitors", "competitive intel", "competitor research", "competitor pricing", "feature comparison", "price comparison", "find comparisons", "who's comparing us", "competitor mentions", "competitor benchmarks".

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Research a topic and grow your knowledge graph. Uses Exa deep researcher, web search, or basic search to investigate topics, files results with full provenance, and chains to processing pipeline. Triggers on "/learn", "/learn [topic]", "research this", "find out about".

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Builds an Azure portal deep link to a specific blade/menu item for supported Microsoft.ContainerService, Microsoft.Kubernetes, and Microsoft.Compute resources using the aks-search-direct-mid semantic search API. WHEN: 'find where in the Azure portal to do something', 'search the portal for an operation', 'construct a portal link from a search query and a resource'.

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Compile current scholarly evidence for a scientific manuscript or research brief. Use when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet. Uses Parallel Search by default, Parallel Extract for source verification, Parallel Research for explicitly deep/exhaustive work, optional explicit Parallel Chat, and optional Perplexity only when requested or allowed as a failure fallback.

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Qianfan Deep Research Agent for complex research tasks. Combines information retrieval, multi-source analysis, content synthesis, and report generation. Use when user needs in-depth research, analysis reports, or comprehensive investigation on complex topics.

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Expert web researcher using advanced search techniques and synthesis. Masters search operators, result filtering, and multi-source verification. Handles competitive analysis and fact-checking. Use PROACTIVELY for deep research, information gathering, or trend analysis.

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Builds an Azure portal deep link to a specific blade/menu item for supported Microsoft.ContainerService, Microsoft.Kubernetes, and Microsoft.Compute resources using the aks-search-direct-mid semantic search API. WHEN: 'find where in the Azure portal to do something', 'search the portal for an operation', 'construct a portal link from a search query and a resource'.

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Optional design-improvement pass for when you have spare usage to drain. Finds the shallowest modules in the code the spec touches, researches a deeper design, and proposes refactors that shrink interfaces and hide decisions — behavior held constant, tests green before and after. Proposes §I/§V/§T edits, never silent rewrites. Triggers when the user says "deepen this", "improve the design", "this module feels shallow", "pull complexity down", "use spare budget on the codebase", or invokes /ck:deepen. Leans on the codebase-design skill's deep-module vocabulary when present.

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Conduct comprehensive AI-powered research with citations via the Tavily CLI. Use this skill when the user wants deep research, a detailed report, a comparison, market analysis, literature review, or says "research", "investigate", "analyze in depth", "compare X vs Y", "what does the market look like for", or needs multi-source synthesis with explicit citations. Returns a structured report grounded in web sources. Takes 30-120 seconds. For quick fact-finding, use tavily-search instead.

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Execute autonomous multi-step research using Google Gemini Deep Research Agent. Use for: market analysis, competitive landscaping, literature reviews, technical research, due diligence. Takes 2-10 minutes but produces detailed, cited reports. Costs $2-5 per task.

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Operate the Deep Researcher Agent repository for autonomous deep-learning experiments, execution backends, provider/tool dispatch, GPU resources, durable progress, and research-support integrations.

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Execute autonomous multi-step research using Google Gemini Deep Research Agent. Use for: market analysis, competitive landscaping, literature reviews, technical research, due diligence. Takes 2-10 minutes but produces detailed, cited reports. Costs $2-5 per task.

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