「reproducible」の検索結果

Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt / environment.yml / uv.lock, Stata version + ado package list), records seeds and RNG kind, optionally writes a pinning Dockerfile, and produces a paste-ready "Computational requirements" block. Use when user says "capture the environment", "snapshot my dependencies", "pin the versions", "make a renv.lock / requirements.txt", "make this byte-reproducible", or before releasing a replication package to openICPSR / the AEA Data Editor.

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Scaffold and run a reproducible Monte Carlo simulation study in R — a declared assumption regime, a parameterized DGP, an estimator grid, a seeded replication loop, and a summary of bias, RMSE, empirical SE, coverage, size/power with Monte Carlo standard errors. Use when the user says "run a Monte Carlo simulation", "simulation study", "check the bias/coverage of an estimator", "compare estimators in simulation", "size and power simulation", "Monte Carlo experiment", or wants to demonstrate an estimator's finite-sample properties. Produces a numbered R script in `scripts/R/` and saves per-replication raw results + a summary table to `output/`.

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For authorized security review of code, auth, or APIs you control, model the attacker, map the attack surface, and report only findings with a reproducible exploit path and verified mitigation.

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Write a clear, reproducible bug report that gets fixed fast. Use when asked to write a bug report, file a defect, report an issue, or turn 'it's broken' into an actionable ticket. Produces a structured report — a precise title, steps to reproduce, expected vs. actual, environment, severity/priority, and evidence — so a developer can reproduce and fix it without a back-and-forth.

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SpecStory Lore - mine your SpecStory coding histories (any agent - Claude Code, Codex, Cursor, Gemini, and more) into a persistent corpus, surface your reproducible workflows with corroborated evidence, and interactively forge the chosen ones into skills installed across all your agent harnesses. Use when the user wants to turn past AI coding sessions into reusable skills, asks "what could I make into a skill", "mine my lore", "forge skills from my history", or points at a .specstory/history directory.

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Diagnose a reproducible failure, fix its cause, and verify the regression. Use for crashes, incorrect behavior, and failing tests.

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Detects TAD boundaries from balanced Hi-C contact matrices via the diamond-window insulation score (cooltools insulation) and HiCExplorer hicFindTADs, returning a continuous log2 insulation track, valley-prominence boundary_strength, and Li/Otsu-thresholded is_boundary flags across a list of window sizes. Covers the multi-scale window sweep (sub-TAD to compartment-domain), why the boundary is reproducible but the domain partition is not, cross-condition comparison via differential SCORE not differential partition, and the insulation-vs-compartment orthogonality. Use when calling TADs or domain boundaries, computing insulation scores, choosing a window size, ranking boundary strength, comparing boundaries across conditions, or annotating CTCF-backed boundaries; route domain rendering to hic-visualization and boundary-feature overlap to genome-intervals.

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Defines cell populations in flow and spectral cytometry through manual gates (rectangle, polygon, quadrant, boolean) and reproducible automated gating (openCyto gating templates, flowDensity data-driven thresholds, flowClust model-based gates), organized as a hierarchical GatingSet (flowWorkspace) and round-tripped with FlowJo via CytoML. Covers the canonical gate order (time -> debris -> singlets -> live -> lineage), FMO-vs-isotype boundary setting, gate-order dependence and recompute semantics, rare-event/MRD gating, and per-population statistics. Use when building a gating strategy, automating a manual FlowJo scheme across samples, choosing manual vs data-driven gates, or extracting population frequencies.

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Download large datasets from NCBI efficiently using EPost, history server, batching, rate limiting, and retry logic. Use when bulk-fetching tens of thousands of sequences, pulling all results of a large ESearch, designing reproducible pipelines, comparing E-utilities to NCBI Datasets v2 CLI, or implementing checksum-validated downloads. Encodes WebEnv TTL (~8h), EPost 200-ID limit, retmax caps, parallelization design, and integrity verification.

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Search NCBI databases using Biopython Bio.Entrez (ESearch, EInfo, EGQuery, ESpell). Use when finding records by keyword, building reproducible field-qualified queries, navigating the Entrez Query Translator, exploiting the history server for large result sets, handling retmax caps, or interpreting weekly index lag. Covers PubMed, Nucleotide, Protein, Gene, SRA, GEO, Assembly, Taxonomy, ClinVar, dbSNP.

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Visualize biological networks (PPI, gene-regulatory, co-expression, pathway) with layout algorithm choice (ForceAtlas2, Fruchterman-Reingold, Kamada-Kawai, hive plots), edge bundling, community-based coloring, and reproducible seeds using NetworkX, PyVis, igraph, and Cytoscape automation. Use when rendering biological networks for static publication, interactive HTML exploration, or Cytoscape-format export.

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Build publication-quality figures with matplotlib using the object-oriented Figure/Axes API, constrained_layout, rcParams customization, TrueType (Type-42) font embedding for journal submission, and CVD-safe palettes. Covers seaborn integration, common chart types, axis formatting, and the small gotchas that distinguish reproducible matplotlib from notebook scratch. Use when producing publication figures in Python — RNA-seq scatter, single-cell embeddings, generic biological plotting.

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Create reproducible development environments with Dev Containers, Nix flakes, and Devbox for consistent toolchains across teams. Use when onboarding developers, standardizing build environments, or eliminating "works on my machine" problems.

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Export conversation MATLAB code to a clean, runnable .m script. Use when asked to save or export session work. TRIGGER: user asks to save, export, or generate a script from the current session's MATLAB code. Also when asked for a reproducible script or clean version of what was run.

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Verify claims, quotations, citations and references against live primary sources, and produce a reproducible audit record instead of an assertion. Use when asked to: check whether a quotation, verse, statistic, date, attribution or citation is accurate; verify references before publishing a report, thesis, article, slide deck or legal filing; confirm a text against an authoritative database; cross-check a claim across independent sources; build a citation register or verification appendix; find out whether two datasets agree; detect a misattributed or fabricated quotation; or audit a document's existing citations. Source-agnostic by design, with working providers for REST/JSON APIs, scraped HTML, bulk corpora, bibliographic catalogues (OpenLibrary), DOI resolution (Crossref) and reference works (Wikipedia) -- including scriptural tiers (Qur'an.com, sunnah.com and an independent hadith corpus) with full diacritic handling for Arabic, Hebrew, Greek and any script with optional marks. Covers content-addressed matching when sources disagree on numbering, graded match verdicts, byte-level integrity checks, published-string verification, and a catalogue of silent failure modes (identifier divergence, mojibake, scraper blocking, false-positive keyword rules, missing glyphs, unreliable PDF text layers).

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Generate and run minimal reproducible Python modeling code for the human-approved main method and usable baseline, saving compact experiment artifacts and a canonical run summary.

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Generate and run minimal reproducible MATLAB or Beita Tianyuan compatible code for the human-approved main method and usable baseline, with compact experiment artifacts and a canonical run summary.

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Build or review source-backed descriptive, diagnostic, predictive, and prescriptive analysis for consequential decisions. Use when an agent must profile and safely prepare uploaded data, turn a real dataset or research question into a reproducible study, investigate drivers without overstating causality, validate a model, compare feasible actions under dependent uncertainty and tail risk, trace every parameter to evidence and approval, or produce an answer-first analytical report across health, business, finance, policy, engineering, operations, behavioral science, AI, or planning.

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Use when a Scenario user wants to report a bug or request a change, on the public tracker at github.com/scenario-labs/skills or by email to support@scenario.com: turning a failed generation, MCP tool error, or unclear skill into a reproducible report, collecting trace ids with diagnostics_run, stripping keys, signed asset URLs, and personal data, asking before sharing a team or project id, or building a prefilled issue URL. Keywords: file an issue, feature request, feedback.

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Diagnose hard bugs and performance regressions with reproducible evidence, focused hypotheses, and proportional instrumentation. Use when something is broken, failing, throwing, intermittently wrong, or unexpectedly slow.

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Use F# Interactive (`dotnet fsi`) for .NET exploration, scriptable experiments, package-backed .fsx workflows, quick data transforms, and reproducible command-line probes. USE FOR: .fsx scripts, F# REPL work, #r nuget references, #load composition, interactive type exploration, and small strongly typed experiments before moving code into a project. DO NOT USE FOR: production application code that needs compiled project structure; C# scripting; long-lived automation better expressed as a normal CLI, test, or build target. INVOKES: run dotnet fsi, edit .fsx scripts, load project or source files, and validate snippets against the target SDK.

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Structured, reproducible analysis documentation. Use when documenting analysis findings, creating analysis notebooks, ensuring reproducibility, or building analysis archives for future reference.

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Run or resume the complete Standard mathematical-modeling workflow from contest files through reproducible evidence, adaptive formal writing, native-equation Word output, and final render QA. Use as the entry point for complete-paper requests.

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Use when you need to add or review fuzz testing for Java APIs with CATS — including contract-driven negative testing, malformed payload validation, boundary input exploration, CI integration, reproducible failures, and local execution guidance. This should trigger for requests such as Add fuzz testing to a Java project; Use CATS for API negative testing; Review CI quality gates for API contract robustness; Improve boundary and malformed input test coverage; Run CATS fuzz tests against an OpenAPI contract. Part of Plinth Toolkit

日本語の概要は準備中です。原文の説明を表示しています。