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概要と使いどころ
TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It c
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Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metada
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The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.
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The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R packag
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Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to
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TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.
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Data quality assessment is an integral part of preparatory data analysis to ensure sound biological information retrieval. We present here the MatrixQCvis package, which provides shiny-based interactive visualization of data quality metrics at the per-sample and per-feature level. It is broadly applicable to quantitative omics data types that come in matrix-like format (features x samples). It enables the detection of low-quality samples, drifts, outliers and batch effects in data sets. Visualiz
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In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis. bio
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Reactome is a free, open-source, curated and peer-reviewed pathway database. Their goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge.
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Provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files. GDS is portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited
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ChIPseeker is a Bioconductor package for annotating ChIP-seq data analysis. Peak Annotation is performed by the annotatePeak function. The position and strand information of nearest genes are reported, in addition to the distance from the p
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Plan shoot-ready Amazon product photography, listing image sets, infographics, lifestyle scenes, and production briefs. Use when a seller asks for an Amazon photo shot list, creative direction, image-pack plan, photography budget, DIY-versus-done-for-you decision, or handoff to a photographer or image-generation workflow. Do not use for listing copy or image-only performance auditing.
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Amazon product listing image strategy and optimization. Comprehensive shot planning, infographic design, lifestyle photography, mobile optimization, and conversion-focused visual content. Use when the user asks about Amazon images, product photography, visual optimization, or listing conversion.
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Full brand strategy workflow for agencies and brand consultants. Acts as a senior brand strategist — collects client information through a structured questionnaire, then generates a complete, polished brand strategy report. Use this skill whenever a user says "brand strategy", "create a brand report", "build brand strategy for my client", "brand questionnaire", "I have a new branding client", "help me do brand strategy", "brand identity strategy", "write a brand strategy document", or shares a client brief and wants a strategy output. Also triggers when a user uploads or pastes a completed brand questionnaire and asks to turn it into a report. Always use this skill for any brand strategy task — even casual mentions like "I need to do strategy for this brand" or "client filled the form, make the report".
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Foundation skill that captures and stores core brand context — identity, audience, positioning, values, and voice. Use when the user says "set brand context", "save my brand info", "store brand details", "brand profile", "create brand context file", "update brand context", or when starting any brand project for the first time. Every other brand skill reads this file first. Always run this before beginning any brand work if the context file doesn't exist yet.
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Use when the user asks about Vibe Motion, motion graphics, kinetic typography, animated text, brand animations, logo animations, infographic animation, presentation animation, data-driven video, or prompt-to-motion-graphic workflows. Vibe Motion is fundamentally different from video generation — it creates deterministic code-based motion graphics, not AI-predicted pixel sequences. Use this when the text/logo must stay perfectly crisp and editable (code). For a cinematic/kinetic AI-generated video ad built from a storyboard (pixel render, native audio), use higgsfield-motion-design instead.
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PPT 生产 Agent：理解场景 → 推荐风格 → 先出大纲 → 定义页面 → 双通路交付（PPT 内容稿 / 逐页视觉图 / 信息图组图）。当用户要做汇报、路演、培训课件、提案、咨询报告的演示文稿，或要把大纲/文章做成 slides、deck、PPT、信息图、小红书图文、可视化传播图时使用。支持指定风格或从风格库推荐，支持 image 模型逐页出视觉稿。前身为 notion-infographic（v2）并吸收 ppt-designer 的设计原则。不用于：pptx 文件的纯技术操作（拆分/合并/提取，用宿主 pptx skill）、演讲稿或文章本体的写作（用 wechat-article-writer）、需要先做研究的内容调研（先走 deep-research 再回来）、单张海报或 logo 设计。
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Rank and summarize the user's own WeChat Moments (朋友圈) feed so real life events and genuine information rise above promotion and small talk, weighted by how much the user actually talks to each author. Use when the user says 'summarize my Moments', 'read my 朋友圈', 'what did I miss on Moments', 'rank my Moments', or 'check my WeChat Moments'.
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Plug-in web search, X (Twitter) search, and page fetch for models without native web access. Use whenever the task needs current information, external facts, source links, posts from X, or the content of a specific URL, and the active model/harness has no native search or fetch tool. Runs the modsearch CLI to return structured JSON evidence. Also use when the user asks how to install or configure modsearch, or wants to switch engines or add a key.
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Анализ структуры схемы компоновки данных 1С (СКД) — наборы, поля, параметры, варианты. Используй для понимания отчёта — источник данных (запрос), доступные поля, параметры
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Анализ структуры макета табличного документа (MXL) — области, параметры, наборы колонок. Используй при разработке печати — получить области и заполняемые параметры макета
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Компактная сводка прав роли 1С из Rights.xml — объекты, права, RLS, шаблоны ограничений. Используй для аудита прав — какие объекты и действия доступны, ограничения RLS
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Анализ структуры подсистемы 1С из XML-выгрузки — состав, дочерние подсистемы, командный интерфейс, дерево иерархии. Используй для изучения структуры подсистем и навигации по конфигурации
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Анализ структуры пакета XDTO 1С — типы, свойства, точки входа. Используй как подготовительный шаг при написании кода, создающего и заполняющего объект XDTO, при разборе входящего XML, а также чтобы узнать, какие пакеты есть в конфигурации
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