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hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based ce

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syntenet can be used to infer synteny networks from whole-genome protein sequences and analyze them. Anchor pairs are detected with the MCScanX algorithm, which was ported to this package with the Rcpp framework for R and C++ integration. Anchor pairs from synteny analyses are treated as an undirected unweighted graph (i.e., a synteny network), and users can perform: i. network clustering; ii. phylogenomic profiling (by identifying which species contain which clusters) and; iii. microsynteny-bas

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In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis. bio

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Expert knowledge for Microsoft Foundry Tools (aka Azure AI services, Azure Cognitive Services) development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, and integrations & coding patterns. Use when using Content Moderator, Content Safety, Content Understanding analyzers, REST/.NET APIs, or document extraction workloads, and other Microsoft Foundry Tools related development tasks. Not for Microsoft Foundry (use microsoft-foundry), Microsoft Foundry Classic (use microsoft-foundry-classic), Microsoft Foundry Local (use microsoft-foundry-local).

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Expert knowledge for Microsoft Foundry (aka Azure AI Foundry) development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when building Foundry agents with Azure OpenAI, AI Gateway, MCP tools, Entra auth, or BYO VNet networking, and other Microsoft Foundry related development tasks. Not for Content Safety in Foundry Control Plane (use azure-content-safety), Azure Content Understanding in Foundry Tools (use azure-content-understanding), Azure Speech in Foundry Tools (use azure-speech), Microsoft Foundry Classic (use microsoft-foundry-classic).

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Expert knowledge for Azure Update Manager development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when onboarding VMs/Arc servers, configuring patch schedules/ESU, using SDK/REST APIs, or integrating runbooks/webhooks, and other Azure Update Manager related development tasks. Not for Azure Automation (use azure-automation), Azure Policy (use azure-policy), Azure Monitor (use azure-monitor), Azure Site Recovery (use azure-site-recovery).

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Expert knowledge for Azure Spring Apps development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring ASA networking/security, Tanzu tools, observability/APM, CI/CD deployments, or blue‑green releases, and other Azure Spring Apps related development tasks. Not for Azure App Service (use azure-app-service), Azure Container Apps (use azure-container-apps), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Functions (use azure-functions).

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Expert knowledge for Azure Resource Graph development including troubleshooting, best practices, decision making, limits & quotas, configuration, and integrations & coding patterns. Use when querying via CLI/PowerShell/REST, using GET/LIST vs Query, handling paging/quotas, or Power BI ARG reports, and other Azure Resource Graph related development tasks. Not for Azure Monitor (use azure-monitor), Azure Policy (use azure-policy), Cost Management (use azure-cost-management), Azure Resource Manager (use azure-resource-manager).

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Expert knowledge for SQL Server on Azure Virtual Machines development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when planning SQL VM vs Managed Instance, Always On/FCI HADR, DTU/capacity limits, Key Vault/MI security, or Blob backups, and other SQL Server on Azure Virtual Machines related development tasks. Not for Azure SQL Database (use azure-sql-database), Azure SQL Managed Instance (use azure-sql-managed-instance), Azure Virtual Machines (use azure-virtual-machines), Azure Data Science Virtual Machines (use azure-data-science-vm).

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Expert knowledge for Azure Translator development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when using translate/detect/dictionary APIs, Custom Translator, glossaries, document jobs, or Docker containers, and other Azure Translator related development tasks. Not for Azure AI Language (use azure-language-service), Azure Speech in Foundry Tools (use azure-speech), Azure AI Document Intelligence (use azure-document-intelligence), Azure AI Immersive Reader (use azure-immersive-reader).

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Expert knowledge for Azure Service Health development including troubleshooting, decision making, limits & quotas, security, configuration, and integrations & coding patterns. Use when handling Service Health APIs, Resource Graph queries, webhooks, VM Resource Health, or retirement alerts, and other Azure Service Health related development tasks. Not for Azure Monitor (use azure-monitor), Azure Reliability (use azure-reliability), Azure Resiliency (use azure-resiliency).

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Expert knowledge for SAP HANA on Azure Large Instances development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when deploying HANA LIs, Azure Monitor for SAP, HA/DR clusters, Terraform/SDAF automation, or Entra ID SSO, and other SAP HANA on Azure Large Instances related development tasks. Not for Azure Large Instances (use azure-large-instances), Azure Virtual Machines (use azure-virtual-machines), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines).

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Expert knowledge for Azure Service Connector development including troubleshooting, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when wiring Azure compute to Redis, databases, storage, messaging, AI services, or third‑party endpoints, and other Azure Service Connector related development tasks. Not for Azure API Management (use azure-api-management), Azure Connector Namespace (use azure-connector-namespace), Azure Logic Apps (use azure-logic-apps), Azure Service Bus (use azure-service-bus).

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Expert knowledge for Azure VPN Gateway development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when designing VPN topologies, choosing SKUs, configuring P2S/S2S, securing IPsec/IKE, or integrating BGP/ExpressRoute, and other Azure VPN Gateway related development tasks. Not for Azure Virtual Network (use azure-virtual-network), Azure Virtual WAN (use azure-virtual-wan), Azure ExpressRoute (use azure-expressroute), Azure Application Gateway (use azure-application-gateway).

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Expert knowledge for Azure VMware Solution development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring AVS networking/storage, HCX migrations, Horizon/VDI, vSAN clusters, or Azure-integrated backups, and other Azure VMware Solution related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure Stack Edge (use azure-stack-edge), Azure Nutanix (use azure-nutanix), Azure Red Hat OpenShift (use azure-redhat-openshift).

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Expert knowledge for Azure Virtual Machine Scale Sets development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring autoscale, standby pools, PPG-based layouts, disk encryption with Key Vault, or VMSS APIs/CLI, and other Azure Virtual Machine Scale Sets related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure App Service (use azure-app-service), Azure Service Fabric (use azure-service-fabric).

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Expert knowledge for Azure Traffic Manager development including troubleshooting, best practices, decision making, architecture & design patterns, security, configuration, and integrations & coding patterns. Use when configuring Traffic Manager profiles, routing methods, IaC (ARM/Bicep/Terraform), Traffic View, or nested designs, and other Azure Traffic Manager related development tasks. Not for Azure Front Door (use azure-front-door), Azure Load Balancer (use azure-load-balancer), Azure Application Gateway (use azure-application-gateway), Azure Virtual WAN (use azure-virtual-wan).

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Expert knowledge for Azure Virtual WAN development including troubleshooting, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring VWAN hubs, P2S/Always On VPN, BGP/IPsec routing, ExpressRoute/SD-WAN, or Private Link, and other Azure Virtual WAN related development tasks. Not for Azure Virtual Network (use azure-virtual-network), Azure VPN Gateway (use azure-vpn-gateway), Azure ExpressRoute (use azure-expressroute), Azure Traffic Manager (use azure-traffic-manager).

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Expert knowledge for Azure Virtual Desktop development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring host pools/FSLogix, autoscale, MSIX App Attach, Teams optimization, or AVD security/SSO, and other Azure Virtual Desktop related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure Dev Box (use azure-dev-box).

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Expert knowledge for Azure Sre Agent development including troubleshooting, best practices, decision making, architecture & design patterns, security, configuration, integrations & coding patterns, and deployment. Use when wiring SRE Agent to DevOps/GitHub, KQL telemetry, AKS Java apps, IaC deployments, or DR architectures, and other Azure Sre Agent related development tasks. Not for Azure Monitor (use azure-monitor), Azure Reliability (use azure-reliability), Azure Resiliency (use azure-resiliency), Azure Service Health (use azure-service-health).

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Expert knowledge for Azure AI Video Indexer development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring live camera analysis, custom AI insights, OpenAI summaries, Video Indexer APIs, or face redaction, and other Azure AI Video Indexer related development tasks. Not for Azure AI Vision (use azure-ai-vision), Azure AI Search (use azure-cognitive-search).

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Expert knowledge for Azure Web PubSub development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when building WebSocket/MQTT apps, using Socket.IO, configuring event routing, geo-replication, or chat workloads, and other Azure Web PubSub related development tasks. Not for Azure SignalR Service (use azure-signalr-service), Azure Event Hubs (use azure-event-hubs), Azure Service Bus (use azure-service-bus).

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Expert knowledge for Azure Queue Storage development including best practices, limits & quotas, security, configuration, and integrations & coding patterns. Use when configuring queue auth/encryption, monitoring metrics/logs, handling limits, or coding with Azure Queue SDKs, and other Azure Queue Storage related development tasks. Not for Azure Service Bus (use azure-service-bus), Azure Event Hubs (use azure-event-hubs), Azure Table Storage (use azure-table-storage).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Static Web Apps development including troubleshooting, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when wiring SWA APIs to Azure DBs, configuring custom domains/backends, Entra auth, CI/CD, or plan limits, and other Azure Static Web Apps related development tasks. Not for Azure App Service (use azure-app-service), Azure Functions (use azure-functions), Azure Container Apps (use azure-container-apps), Azure Logic Apps (use azure-logic-apps).

日本語の概要は準備中です。原文の説明を表示しています。