「sci」の検索結果

This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.

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Generate or edit images using AI models (FLUX, Gemini). Use for scientific illustrations, diagrams, schematics, infographics, concept visualizations, and artistic images. Supports image editing to modify existing images (change colors, add/remove elements, style transfer). Useful for figures, posters, and visual explanations.

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Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.

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Christian mystical wisdom through Aramaic lens - Kingdom within, Christ consciousness, feminine divine, embodiment navigation

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Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

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Search arXiv preprint repository for papers in physics, mathematics, computer science, quantitative biology, and related fields

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Recognize which awakening stage consciousness is navigating through. Use when diagnosing seeker development, identifying stage transitions, or recognizing readiness levels. Covers 7 stages from initial dissatisfaction through natural flow mastery.

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Use when about to record, claim, rate the severity of, or report any security finding — before marking anything [CONFIRMED] or writing it into the report

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Use when about to take any outward or offensive action (request, payload, persistence, lateral movement, exfil, or feeding captured traffic to the model) — to decide detection footprint, cleanup, and secret redaction first

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Use when about to send a request to, scan, enumerate, exploit, or otherwise interact with any host, IP, URL, or asset — before the first packet reaches a target

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Use when starting an engagement, before exploitation, or whenever the attack surface changes — build/validate the threat model and detect drift (new unreviewed surface) before advancing

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Wireframe-first pass — outputs an ASCII layout + state list + content inventory + question list before any code. Use when starting a new screen from scratch or when the user's brief is still ambiguous. Invoke when the user asks for shape on their UI, or mentions 'shape' alongside design / UI / frontend work.

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Draft, restructure, and diagnose IEEE-style technical manuscript sections using a routed static/dynamic workflow. Use for IEEE conference, journal, Transactions, Letters, or magazine papers when writing titles, abstracts, introductions, related work, methods, experiments, conclusions, contribution statements, section outlines, or Chinese-to-English engineering paper drafts in AI, computer science, communications, control, signal processing, electrical/electronic engineering, power, robotics, circuits, and applied systems.

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Polish, translate, diagnose, and restructure technical manuscript text into IEEE-style academic English using routed failure-mode guidance. Use for IEEE abstracts, introductions, related work, methods, experiments, conclusions, figure captions, rebuttals, Chinese-to-English technical writing, AI-like or template-like academic prose, and engineering prose that needs clearer problem logic, contribution framing, method rationale, evidence discipline, natural author voice, or reviewer-ready wording.

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HTML, CSS, and JavaScript craft guidelines from bendc/frontend-guidelines — semantics, a11y basics, selector discipline, motion-friendly CSS, and readable JS. Use for markup review, static HTML/CSS, email HTML, or general front-end hygiene; pair with repo frontend rules and TypeScript lint policy.

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Best practices for single-cell RNA-seq cell type annotation including marker-based, reference-based, and automated classification approaches.

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Guide to quality filtering raw VCF files before computing summary stats (Ts/Tv ratio, variant counts, AF distributions). Covers detecting raw VCFs via FILTER column and QUAL inspection, QUAL-based filtering with bcftools, Ts/Tv interpretation, and when NOT to filter. Read before any variant-level QC task. See bcftools-variant-manipulation for advanced filters, gatk-variant-calling for caller config, samtools-bam-processing for upstream alignment QC.

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Annotate and filter VCF variants with SnpEff and SnpSift. SnpEff predicts functional effects (HIGH/MODERATE/LOW/MODIFIER), genes, transcripts, AA changes, HGVS; SnpSift filters and adds ClinVar/dbSNP. Java CLI with Python subprocess integration. Use ANNOVAR for multi-database annotation; Ensembl VEP for REST API; SnpEff for fast CLI with pre-built genomes.

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GWAS and population genetics tool. Processes PLINK (.bed/.bim/.fam), VCF, and BGEN; runs QC (MAF, HWE, missingness), IBD estimation, PCA, and linear/logistic regression GWAS. Outputs Manhattan-ready summary stats. Use regenie or SAIGE for biobanks (>100k samples) needing mixed models.

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GATK Best Practices for germline SNP/indel calling from WGS/WES BAMs. Per-sample HaplotypeCaller GVCFs, GenomicsDBImport, GenotypeGVCFs joint calling, VQSR or hard filters. Requires BWA-MEM2-aligned, markdup, BQSR BAMs. Use DeepVariant for a faster DL alternative; GATK is the NIH/ENCODE standard.

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Interactive visualization with Plotly. 40+ chart types (scatter, line, heatmap, 3D, geographic) with hover, zoom, pan. Two APIs: Plotly Express (DataFrame) and Graph Objects (fine control). For static publication figures use matplotlib; for statistical grammar use seaborn.

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Statistical visualization on matplotlib + pandas. Distributions (histplot, kdeplot, violin, box), relational (scatter, line), categorical, regression, correlation heatmaps. Auto aggregation/CIs. Use plotly for interactive; matplotlib for low-level.

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Opentrons Protocol API v2 for OT-2/Flex: Python protocols for pipetting, serial dilutions, PCR, plate replication; control thermocycler, heater-shaker, magnetic, temperature modules. Use pylabrobot for multi-vendor.

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Query the ClinPGx (formerly PharmGKB) REST API plus the CPIC PostgREST companion API for pharmacogenomic clinical annotations, CPIC/DPWG dosing guidelines, gene-drug pairs, variant-drug associations, FDA/EMA drug labels, and PGx pathways. Two-host architecture: api.clinpgx.org for annotation records, api.cpicpgx.org for genotype→recommendation lookups. No auth. For germline pathogenicity use clinvar-database; for somatic cancer PGx use cosmic-database or opentargets-database; for drug bioactivity use chembl-database-bioactivity.

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