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Work with the full set of Maxwell's equations in integral and differential form to analyze electromagnetic fields, waves, and energy transport. Use when applying Gauss's law, Faraday's law, or the Ampere-Maxwell law to boundary value problems, deriving the electromagnetic wave equation, computing Poynting vector and radiation pressure, solving for fields at material interfaces, or connecting electrostatics and magnetostatics to the unified electromagnetic framework.

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Fit hidden Markov models using the Baum-Welch (EM) algorithm with model selection, Viterbi decoding for state sequences, and forward-backward probabilities. Use when observations are generated by unobservable latent states, you need to segment a time series into latent regimes (market regimes, speech phonemes, biological sequences), compute sequence probabilities, decode the most likely hidden state path, or compare models with different numbers of hidden states.

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Generate jigsaw puzzles via generate_puzzle() or geom_puzzle_*() with parameter validation against inst/config.yml. Supports rectangular, hexagonal, concentric, voronoi, and snic puzzle types with configurable grid, size, seed, offset, and layout parameters. Use when creating puzzle SVG files for a specific type and configuration, testing generation with different parameters, generating sample output for documentation or demos, or creating ggplot2 puzzle visualizations.

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Draft a project charter that defines scope, stakeholders, success criteria, and initial risk register. Covers problem statement, RACI matrix, milestone planning, and scope boundaries for both agile and classic methodologies. Use when kicking off a new project or initiative, formalizing scope after an informal start, aligning stakeholders before detailed planning begins, or transitioning from discovery to active project work.

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Design sustainable on-call rotations with balanced schedules, clear escalation policies, fatigue management, and handoff procedures. Minimize burnout while maintaining incident response coverage. Use when setting up on-call for the first time, scaling a team from 2-3 to 5+ engineers, addressing on-call burnout or alert fatigue, improving incident response times, or after a post-mortem identifies handoff issues.

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Deploy machine learning models to production serving infrastructure using MLflow, BentoML, or Seldon Core with REST/gRPC endpoints, implement autoscaling, monitoring, and A/B testing capabilities for high-performance model inference at scale. Use when deploying trained models for real-time inference, setting up REST or gRPC prediction APIs, implementing autoscaling for variable load, running A/B tests between model versions, or migrating from batch to real-time inference.

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Perform controlled dismantling of rigid system structures while preserving essential capabilities (imaginal discs). Covers rigidity mapping, dissolution sequencing, knowledge extraction, interface archaeology, and safe decomposition of technical debt and organizational calcification. Use when assess-form classified the system as PREPARE or CRITICAL, when a system is so calcified that incremental change is impossible, when technical debt blocks all forward progress, or before adapt-architecture when the current form must be softened before it can be reshaped.

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Design a compliance architecture that maps applicable regulations to computerized systems. Covers system inventory, criticality classification (GxP-critical, GxP-supporting, non-GxP), GAMP 5 category assignment, regulatory requirements traceability, and governance structure definition. Use when establishing a new regulated facility, formalising compliance across multiple systems, addressing a regulatory gap analysis, harmonising compliance after mergers or reorganisations, or preparing a site master file that references computerized systems.

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Apply the fail-early (fail-fast) pattern to detect and report errors at the earliest possible point. Covers input validation with guard clauses, meaningful error messages, assertion functions, and anti-patterns that silently swallow failures. Primary examples in R with general/polyglot guidance. Use when writing functions that accept external input, adding input validation before CRAN submission, refactoring code that silently produces wrong results, reviewing PRs for error-handling quality, or hardening internal APIs against invalid arguments.

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Design an A2A Agent Card (.well-known/agent.json) manifest describing agent capabilities, skills, authentication requirements, and supported content types. Use when building an agent that must be discoverable by other A2A-compliant agents, exposing capabilities for multi-agent orchestration, migrating an existing agent to the A2A protocol, defining the public contract for an agent before implementation, or integrating with agent registries that consume Agent Cards.

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Configure MCP (Model Context Protocol) servers for Claude Code and Claude Desktop. Covers mcptools setup, Hugging Face integration, WSL path handling, and multi-client configuration. Use when setting up Claude Code to connect to R via mcptools, configuring Claude Desktop with MCP servers, adding Hugging Face or other remote MCP servers, or troubleshooting MCP connectivity between clients and servers.

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Create a Dockerfile for R projects using rocker base images. Covers system dependency installation, R package installation, renv integration, and optimized layer ordering for fast rebuilds. Use when containerizing an R application or analysis, creating reproducible R environments, deploying R-based services (Shiny, Plumber, MCP server), or setting up consistent development environments across machines.

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Create a GitHub release with proper tagging, release notes, and optional build artifacts. Covers semantic versioning, changelog generation, and GitHub CLI usage. Use when marking a stable version of software for distribution, publishing a new library or application version, creating release notes for stakeholders, or distributing build artifacts (binaries, tarballs).

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Capture outbound HTTP and telemetry from a CLI harness at runtime. Covers capture-channel selection (transcript file vs verbose-fetch stderr vs outbound proxy vs on-disk state), hook-driven per-event capture vs long-running session capture, JSONL output format for diff-friendly artifacts, and the observability table that maps each target to the cheapest channel that captures it. Use when a static finding needs runtime confirmation, when a payload shape is needed for a client re-implementation, or when dark-vs-live disambiguation requires watching what the binary actually sends.

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Compose 2D graphics programmatically using SVG generation, diagram layout algorithms, image compositing, and batch processing workflows. Use when generating diagrams, flowcharts, or infographics programmatically, creating reproducible scientific figures, automating production of badges or visual assets, building custom chart types not in standard libraries, or batch generating graphics with parameter variations.

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Unify metrics, logs, and traces for cohesive debugging. Implement exemplars for log-to-trace linking, build unified dashboards using RED/USE methods, and enable rapid root cause analysis across observability signals. Use when investigating complex incidents spanning multiple systems, reducing mean time to resolution, implementing distributed tracing, or moving from siloed tools to a unified observability platform.

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Conduct a blameless post-mortem analysis after an incident. Build timeline reconstruction, identify contributing factors, and generate actionable improvements. Focus on systemic issues rather than individual blame. Use after any production incident or service degradation, following a near-miss, when investigating recurring issues, or to share systemic learnings across teams.

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Coordinate safely with a peer interactive session sharing the same git worktree — check first whether a separate worktree removes the problem, then declare path and branch scope before the first edit, survive a contended index lock, and review the whole branch before opening a PR. Activate when starting work in a repository that may already be occupied, when a git command fails with `index.lock: File exists`, when `guard:snapshot` refuses because a snapshot already exists, or when a commit turns out to contain a file this session never edited. When one session leads and the other supports, divide the labour by shape and re-derive every reported number against a named revision before citing it. Distinct from subagent concurrency: a peer session cannot be bracketed, because no baseline exists from before its edits.

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Containerize an R-based MCP (Model Context Protocol) server using Docker. Covers mcptools integration, port exposure, stdio vs HTTP transport, and connecting Claude Code to the containerized server. Use when deploying an R MCP server without requiring a local R installation, creating a reproducible MCP server environment, running MCP servers alongside other containerized services, or distributing an MCP server to other developers.

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Reference Hildegard von Bingen's Physica natural history knowledge. Covers classification of plants, stones, animals, fish, birds, elements, and trees with their medicinal, symbolic, and practical properties. Enables cross- referencing between categories and application guidance. Use when exploring a specific plant, stone, or animal from Hildegard's perspective, researching medieval natural history and cosmology, cross-referencing properties across categories, or integrating Physica knowledge into health, spiritual, or creative practice.

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Add an external probabilistic classifier to a decision path without letting it take the path over. Covers finding the externally-graded rows you are already logging, measuring the confidence separation between the overrides it got right and the ones it got wrong, choosing an operating point your data licenses, failing open at the call site, and proving the whole arrangement offline with no API key. Applies to any service returning a score you can order — TypeSafe AI's System One models (Jev) are the worked example. Most of the method transfers to a local model or a second heuristic, with the parts that do not called out where they arise. Use when a rule-based path is wrong often enough to hurt, when someone proposes replacing a heuristic with a model, when a confidence threshold needs a defensible value, or when an oracle already in production has never been graded.

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Conduct a project or sprint retrospective by gathering data from status reports and velocity metrics, structuring what went well and what needs improvement, and generating actionable improvement items with owners and due dates. Use at the end of a sprint, after a project phase or milestone, following a significant incident or success, at a quarterly review of ongoing processes, or before starting a similar project to capture lessons learned.

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Perform a ruler-and-compass construction with step-by-step justification for each operation, producing a constructible geometric figure from given elements. Covers classical Euclidean constructions including perpendicular bisectors, angle bisectors, parallel lines, regular polygons, and tangent lines. Use when given geometric elements (points, segments, angles) and asked to produce a Euclidean construction, verify constructibility, or generate ordered construction steps for educational or documentation purposes.

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Configure Prometheus Alertmanager with routing trees, receivers (Slack, PagerDuty, email), inhibition rules, silences, and notification templates for actionable incident alerting. Use when implementing proactive monitoring with automated incident detection, routing alerts to the appropriate team by severity, reducing alert fatigue through grouping and deduplication, integrating with on-call systems like PagerDuty, or migrating from legacy alerting to Prometheus-based alerting.

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