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Create, merge, and deduplicate BibTeX bibliography files using R packages (RefManageR, bibtex). Parse .bib files into structured R objects, merge multiple bibliographies with deduplication by DOI or title similarity, generate entries from DOI/ISBN/arXiv ID, and export clean sorted .bib files. Use when creating a new .bib file for an R Markdown or Quarto project, merging bibliographies from multiple collaborators, deduplicating a .bib that has grown through copy-paste accumulation, or generating BibTeX entries programmatically from DOIs or other identifiers.

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Design terminal output for a CLI tool with chalk colors, Unicode glyphs, multiple verbosity levels (human, verbose, quiet, JSON), and consistent voice rules. Covers color palette selection, status indicator design, reporter function architecture, ceremony/narrative output variants, and cross-terminal compatibility. Use when building a new CLI reporter module, adding warm narrative output to an existing tool, standardizing output across multiple commands, or designing machine-readable JSON alongside human-readable text.

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Deploy ShinyProxy for hosting multiple containerized Shiny applications. Covers ShinyProxy Docker deployment, application.yml configuration, Shiny app Docker images, authentication, container backends, usage tracking, and scaling. Use when hosting multiple Shiny apps behind a single entry point, needing per-app authentication and access control, deploying Shiny apps as isolated Docker containers, or scaling beyond single-app deployment with usage analytics and audit logging.

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Configure reverse proxy patterns across multiple tools including Nginx, Traefik, and ShinyProxy. Covers WebSocket proxying, path-based and host-based routing, SSL termination, and Docker label auto-discovery. Use when routing multiple services behind a single entry point, proxying WebSocket connections (Shiny, Socket.IO), auto-discovering Docker services with Traefik labels, or adding SSL termination to services that don't handle TLS natively.

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Master skill composing the 5-step synoptic cycle for panoramic synthesis across multiple domains. Orchestrates meditate, expand-awareness, observe, awareness, integrate-gestalt, and express-insight into a coherent process that produces unified understanding rather than sequential compromise. Use when a problem genuinely spans 3+ domains and the interactions between domains matter more than depth in any one, when sequential analysis feels like compromise rather than integration, or before major architectural decisions affecting multiple stakeholders.

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Plan the skills an ask needs, invoke each as its condition arrives. Use when the ask has multiple aspects that different skills carry, or the user named multiple skills.

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Compute a unified outer hull around a group of hex tiles that includes multiple disconnected sub-clusters separated by 1-tile gaps. Use when: (1) rendering nested hierarchy hulls (e.g. "package" hull wrapping multiple "sub-region" hex islands), (2) the naive boundary trace outlines each island separately instead of as one bag, (3) flood-fill from outside walks THROUGH the 1-hex gaps and marks them exterior, (4) heuristic "non-adjacent same-group neighbours" over-fills L-shape concavities, (5) axial-only opposite-pair filling misses non-axial bridges between islands. Solution: morphological close (dilate + erode) on the hex grid — fills exactly the interior 1-hex gaps without affecting exterior corners, then trace boundary on the closed shape.

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Gathers information from multiple sources in parallel, compares what they say, flags where they agree or conflict, and delivers a clean synthesis with a confidence rating for each finding. Useful for making evidence-backed decisions, when evaluating competing claims, during due diligence on a vendor or market, and for building research briefs before strategy sessions. Use when the user says "research this", "synthesize multiple sources", "compare sources", "research report", "what does the evidence say", "gather information on", or "deep dive into".

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Analysis of Competing Hypotheses — structured technique for evaluating multiple explanations against evidence. Use when facing ambiguous attribution or multiple plausible scenarios. Prefers graded evidence items from /quality-of-information-check and runs that skill first when handed raw URLs or text. Runs on ungraded evidence when asked, labelled as such, unweighted, and capped at Moderate confidence.

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Multi-agent orchestration patterns. Use when multiple independent tasks can run with different domain expertise or when comprehensive analysis requires multiple perspectives.

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Tired of juggling multiple audio APIs? This skill gives you one-command access to TTS, music generation, sound effects, and voice cloning. Use when you want to generate any audio without managing multiple API keys.

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Build comprehensive histone mark maps by aggregating narrowPeak data across multiple ENCODE experiments, donors, and labs. Use when the user wants to answer "where is this histone mark present in my tissue?" by combining peak calls from multiple studies into a union peak set with confidence annotations. Handles cross-lab batch effects, broad vs narrow marks, and ENCODE blocklist filtering.

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Detect keyword cannibalization by identifying queries where multiple pages are competing for the same ranking. Uses Google Search Console data to find queries appearing across 2 or more pages. Use when user says "keyword cannibalization", "same keyword multiple pages", "cannibalizing keywords", or "duplicate rankings".

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Multi-agent orchestration patterns. Use when multiple independent tasks can run with different domain expertise or when comprehensive analysis requires multiple perspectives.

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Add a text watermark to one or multiple PDFs by uploading them to the Solutions API, polling until completion, then returning download URL(s) for the watermarked PDF(s) (or a ZIP if multiple).

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Fast parallel codebase scouting. Spawns multiple Explore subagents to search directories simultaneously, returning a consolidated file map with architecture fingerprint, complexity estimates, and routing suggestions. Use before planning, debugging, or any task spanning multiple directories. NOT for reading a single known file in depth (use Read directly); NOT for semantic find-usages or go-to-definition.

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Implements multiplicity control for confirmatory clinical trials using graphical procedures (Bretz-Maurer-Hommel), gatekeeping (parallel, serial, mixed), Hochberg/Hommel/Holm with PRDS, and the closed-testing principle (Marcus-Peritz-Gabriel; Goeman 2021 admissibility). Covers FDA Multiple Endpoints Final Guidance (October 2022), graphical procedures via R gMCP, primary + key-secondary + subgroup hierarchies, and FWER vs FDR distinction. Use when designing the multiplicity strategy for confirmatory trials with multiple primary or key secondary endpoints.

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Perform multiple sequence alignment using MAFFT, MUSCLE5, ClustalOmega, or T-Coffee. Guides tool and algorithm selection based on dataset size, sequence divergence, and downstream application. Use when aligning three or more homologous sequences for phylogenetics, conservation analysis, or evolutionary studies.

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Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.

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4人の異なる専門家ペルソナ（20年ベテランエンジニア、TDDエキスパート、Clean Codeエキスパート、バグハンター）で ソースコードを批判的にレビューするスキル。設計判断、テスト容易性、可読性、バグ検出の観点から コードの問題を検出し、改善提案を行う。Python/JavaScriptに対しては追加のチェックポイントを適用。 バグハンターは状態遷移、例外パス、依存関係、非同期競合に特化し、本番環境での問題を事前に検出する。 Use when reviewing source code from multiple expert perspectives to find design flaws, testability issues, code quality problems, and runtime bugs. Triggers: "critical code review", "multi-persona code review", "expert code review", "code quality assessment", "find bugs".

変更が波及する全モジュール・全フローを特定し、集計ルール、状態遷移、符号反転、 コピペ差分、表示/帳票/APIの整合性を監査するスキル。Impact Mapで変更核から 影響範囲を可視化し、Consistency Matrixで横断整合を検証し、Copy Propagation Review戦略でコピペ実装を効率的にレビューする。 Use when one change affects multiple modules, reports, flows, or copied implementations. Audits aggregation totals, state transitions, sign inversion, and cross-module consistency.

Compare standardized metrics across multiple ego-benchmark-harness runs by recalculating them from tasks.jsonl and session JSONL, never from HTML reports. Covers overall aggregates (success rate/average score), Odysseys per-rubric pass rates, duration distributions (avg/p50/p90/max), turns/tools/cost, error and exception counts, per-task success matrices, helper distributions, and the share of DOM operations. Use whenever users ask to compare data or metrics across runs, calculate aggregate/Odysseys/duration/turn/error/helper metrics, inspect differences among runs, or compare multiple rwb/real-world-bench runs. Use pi-session-analyzer instead for deep forensic analysis of why an individual task was slow or failed.

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Expert tmux session, window, and pane management for terminal multiplexing, persistent remote workflows, and shell scripting automation.

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Transform transcripts, conversations, or raw notes into shareable content — either multiple social posts OR a single long-form article. Learns style from user's published content. Handles transcripts of any length (tested up to 5500+ lines / 90+ min). Use when user: (1) provides transcript/conversation/recording and wants social content, (2) asks to "turn recording/notes into posts", (3) mentions generating content from recordings/notes, (4) needs multiple publishable pieces from single source, (5) asks to write an article from a transcript — e.g. "write an article/long-form", "organize into an article", "write up this session", "turn this talk into a blog post", "deep dive". Social mode outputs 2-15 ready-to-publish pieces. Article mode outputs a structured long-form piece (3000-10000+ chars) written section-by-section.

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