「collection」の検索結果

Refactor Spring Boot and Java code to improve maintainability, readability, and adherence to enterprise best practices. This skill transforms messy Spring Boot applications into clean, well-structured solutions following SOLID principles and Spring Boot 3.x conventions. It addresses fat controllers, improper transaction boundaries, field injection anti-patterns, and scattered configuration. Leverages Java 21+ features including record patterns, pattern matching for switch, virtual threads, and sequenced collections.

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Use when adding hypermedia links to REST responses, building self-describing APIs, or implementing Spring HATEOAS. Use when you see EntityModel, CollectionModel, or RepresentationModel in the project.

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Provides expert knowledge for building Astro 5+ sites with Islands Architecture, Content Collections, TypeScript, and performance-first rendering strategies.

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Survey available blocks from local AEM Edge Delivery Services project and Block Collection to understand the block palette available for authoring. Returns block inventory with purposes to inform content modeling decisions.

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Use this skill when the user requests to generate, create, or write professional research reports including but not limited to market analysis, consumer insights, brand analysis, financial analysis, industry research, competitive intelligence, investment due diligence, or any consulting-grade analytical report. This skill operates in two phases — (1) generating a structured analysis framework with chapter skeleton, data query requirements, and analysis logic, and (2) after data collection by other skills, producing the final consulting-grade report with structured narratives, embedded charts, and strategic insights.

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Annotates bacterial and archaeal genomes (isolates, MAGs, plasmids) with Bakta (active versioned databases, NCBI-compliant output) or Prokka (legacy), producing GFF3/GenBank/EMBL/FASTA with INSDC locus tags. Covers Bakta-vs-Prokka-vs-PGAP-vs-DFAST choice, light-vs-full database tiers, translation-table selection (11/4/25), archaeal and leaderless-gene caveats, the small-ORF blind spot, pseudogene-vs-phase-variation, the pangenome re-annotation trap, and submission compliance. Use when annotating a newly assembled prokaryotic genome, choosing an annotation tool, re-annotating a collection for pangenomics, or preparing annotations for NCBI/DDBJ submission.

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Compose multi-panel publication figures with patchwork, cowplot, gridExtra (R), or matplotlib GridSpec/subfigures (Python) including shared axes/legends/guides collection, panel labels in Nature/Cell convention, and journal-spec sizing. Covers patchwork ≥1.2.0 axes='collect' feature, Type-42 font embedding, and the cairo_pdf save path. Use when composing 2+ subpanels into a single figure for journal submission.

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Discovers de novo motifs and tests known motif enrichment in ChIP-seq, ATAC-seq, or other peak sequences using HOMER, MEME-ChIP (STREME, CentriMo, TOMTOM, FIMO), monaLisa, and AME. Handles background selection (GC-matched, dinucleotide-shuffled, Markov order-2, peak-flanks), motif databases (JASPAR 2024 CORE PWMs, JASPAR 2026 deep-learning collection, HOCOMOCO v12, HOMER built-in), centrally-enriched motif testing, and differential motif analysis. Use when identifying TF binding motifs in peaks, testing for known TF enrichment, scanning for motif instances, comparing motif content between conditions, or interpreting motifs from deep learning models.

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Standardizes molecular structures using ChEMBL chembl_structure_pipeline and RDKit rdMolStandardize covering sanitization, salt/solvent stripping, neutralization, tautomer canonicalization, stereochemistry standardization, mixture handling, and isotope normalization. Explicitly compares ChEMBL pipeline, canSARchem, and PubChem standardization choices. Use when preparing libraries for QSAR training, joining datasets across sources, deduplicating compound collections, or building canonical compound registries.

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Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data. Uses BPNet (Avsec 2021 Nat Genet 53:354; soft motif syntax from ChIP-nexus), chromBPNet (Pampari A et al 2025 Nat Genet; bias-factorized base-resolution profiles), EnFormer (Avsec 2021 Nat Methods 18:1196; 196 kb input, ~100 kb effective receptive field), DeepSEA (Zhou 2015; multi-task CNN), and JASPAR 2026 deep-learning collection (1259 BPNet ChIP models). Performs in silico mutagenesis for variant-effect prediction, DeepLIFT/Grad attribution, and TF-MoDISco motif discovery from attribution scores. Use when predicting variant effects on TF binding, discovering soft motif syntax / cooperativity, integrating ChIP-seq with sequence-only predictions, or applying precomputed JASPAR Deep Learning models to new variants.

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Use this skill when a driver is returning to safety-sensitive duty after a positive test or refusal. Covers the SAP clearance, RTD test requirements (observed collection), and Clearinghouse update sequence.

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Use this skill when the user requests to generate, create, or write professional research reports including but not limited to market analysis, consumer insights, brand analysis, financial analysis, industry research, competitive intelligence, investment due diligence, or any consulting-grade analytical report. This skill operates in two phases — (1) generating a structured analysis framework with chapter skeleton, data query requirements, and analysis logic, and (2) after data collection by other skills, producing the final consulting-grade report with structured narratives, embedded charts, and strategic insights.

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Supply chain investigation, evidence recovery, and forensic analysis for GitHub repositories. Covers deleted commit recovery, force-push detection, IOC extraction, multi-source evidence collection, hypothesis formation/validation, and structured forensic reporting. Inspired by RAPTOR's 1800+ line OSS Forensics system.

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Deploy your own Open-Inspect instance. Use when the user wants to set up, deploy, or onboard to Open-Inspect. Guides through repository setup, credential collection, Terraform deployment, and verification with user handoffs.

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Expert Proxmox VE automation using the community.proxmox Ansible collection for VM provisioning, template management, and cluster operations with minimal CLI usage.

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You are a monitoring and observability expert specializing in implementing comprehensive monitoring solutions. Set up metrics collection, distributed tracing, log aggregation, and create insightful dashboards that provide full visibility into system health and performance.

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Specialized skill for containerized database testing using Testcontainers. Use when testing real database behavior, using SQL Server/PostgreSQL/MySQL containers, testing EF Core/Dapper. Covers container startup, database migrations, test isolation, container sharing. Keywords: testcontainers, container testing, database testing, MsSqlContainer, PostgreSqlContainer, MySqlContainer, EF Core testing, Dapper testing, Testcontainers.MsSql, Testcontainers.PostgreSql, GetConnectionString, IAsyncLifetime, CollectionFixture

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Complete guide for ASP.NET Core Web API integration testing. Use when performing integration testing on Web API endpoints or validating ProblemDetails error format. Covers WebApplicationFactory, IExceptionHandler, Testcontainers multi-container orchestration, Flurl URL construction, and AwesomeAssertions HTTP validation. Keywords: webapi integration testing, WebApplicationFactory, asp.net core integration test, webapi integration test, IExceptionHandler, ProblemDetails, ValidationProblemDetails, AwesomeAssertions, Flurl, Respawn, Be201Created, Be400BadRequest, multi-container testing, Collection Fixture, global exception handling

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Designs types for performance. struct vs class, sealed, readonly struct, Span/Memory, collections.

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Synchronizes threads and protects shared state. lock, SemaphoreSlim, Interlocked, concurrent collections.

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Using records, pattern matching, primary constructors, collection expressions. C# 12-15 by TFM.

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Detect malicious email forwarding rules created by adversaries to maintain persistent access to email communications for intelligence collection and BEC attacks.

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Conducts security testing of REST, GraphQL, and gRPC APIs to identify vulnerabilities in authentication, authorization, rate limiting, input validation, and business logic. The tester uses the OWASP API Security Top 10 as the testing framework, combining Burp Suite interception with Postman collections and custom scripts to test endpoint security at every privilege level. Activates for requests involving API security testing, REST API pentest, GraphQL security assessment, or API vulnerability testing.

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Extract and analyze Windows Registry hives to uncover user activity, installed software, autostart entries, and evidence of system compromise.

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