「coding」の検索結果

Aligns sample metadata with count matrices and constructs design matrices for downstream DE, handling the alphabetical-reference-level trap (relevel BEFORE DESeq), LRT reduced-model rules, the interaction-term resultsNames trap, continuous-covariate scaling and splines, repeated measures via duplicateCorrelation or dream, high-cardinality categorical pseudo-singular designs, sample swap detection via XIST/RPS4Y1 expression and somalier/NGSCheckMate genotypes, SABV (sex-as-biological-variable) mandate, Simpson's-paradox collapsing of technical replicates, and the `~ 0 + group` parameterization for clean contrasts. Use when building a design matrix, troubleshooting reversed fold-change direction, encoding paired or repeated-measures designs, detecting sample swaps, deciding sex-as-covariate, or aggregating technical replicates.

日本語の概要は準備中です。原文の説明を表示しています。

Select colormaps and qualitative palettes for scientific figures using perceptual-uniformity, color-vision-deficiency safety, and luminance-monotonicity criteria. Covers Crameri scientific colormaps, viridis/cividis/magma, Okabe-Ito categorical, ColorBrewer, and the rainbow/jet critique. Use when choosing palettes for heatmaps, scatter, networks, or any encoding where color carries quantitative or categorical meaning.

日本語の概要は準備中です。原文の説明を表示しています。

Build sequence logos from aligned DNA, RNA, or protein motifs using ggseqlogo (R), Logomaker (Python), or WebLogo with explicit bits vs probability encoding, background-frequency correction, custom alphabets, and multi-logo stacking. Use when visualizing motif PWMs (TF binding, splice sites, CRISPR spacers), aligned-position composition, or comparing two motif sets.

日本語の概要は準備中です。原文の説明を表示しています。

Plot per-group distributions of continuous data using boxplots, violins, beeswarms, quasirandom jitter, and raincloud plots with sample-size honesty (Weissgerber 2015), KDE-bandwidth awareness, and N-aware encoding choices. Use when comparing distributions across a small number of groups — expression per cluster, biomarker per arm, scores per condition — and the bar-of-mean default is misleading.

日本語の概要は準備中です。原文の説明を表示しています。

Detect positive (diversifying / episodic / pervasive) selection using codon dN/dS frameworks. Implements PAML codeml site models (M0/M1a/M2a/M7/M8/M8a), branch models, branch-site model A (Zhang 2005), and HyPhy methods (BUSTED, BUSTED-S, BUSTED-MH, BUSTED-PH, MEME, FEL, FUBAR, aBSREL, SLAC, RELAX, GARD, FUBAR-MH). Includes McDonald-Kreitman framework (asymptotic alpha, impMKT, polyDFE, DFE-alpha, GRAPES) for within-species + divergence inference, RERconverge for trait-correlated rate shifts, CSUBST for convergent substitution, and PhyloAcc for accelerated noncoding evolution. Use when testing adaptive evolution at codons, branches, or full gene; running GARD recombination pre-screen; controlling alignment-error and gBGC false positives; reconciling PAML vs HyPhy results; or performing genome-scale selection scans.

日本語の概要は準備中です。原文の説明を表示しています。

A workflow skill that lets Codex keep coding for 60 hours on medium and large projects: Claude Code CLI plans through an interactive requirements questionnaire, PRD, specs, and roadmap; Codex implements verified vertical slices, with resumable Long-Run Execution for lengthy work; Trellis maintains project memory. Use when the user mentions 大项目工作流, Codex 连续开发 60 小时, Codex 长任务, long-running or resumable Codex implementation, large/medium project, new SaaS, multi-module system, requirements questionnaire, Claude Code CLI planning, Codex implementation handoff, Trellis bootstrap, non-system-drive project, or vertical slice. Skip for: single-file edits, casual Q&A, copy polish, throwaway prototypes, or tasks the user explicitly wants done fast without process.

日本語の概要は準備中です。原文の説明を表示しています。

Design patterns for building autonomous coding agents, inspired by [Cline](https://github.com/cline/cline) and [OpenAI Codex](https://github.com/openai/codex).

日本語の概要は準備中です。原文の説明を表示しています。

AI-powered E2E web testing — eyes and hands for AI coding tools. Declarative YAML scenarios, Playwright execution, visual matching (OpenCV + OCR), platform auto-detection (Flutter/React/Vue), learning DB. Install: npx skills add ksgisang/awt-skill --skill awt -g

日本語の概要は準備中です。原文の説明を表示しています。

Use when a coding task should be driven end-to-end from issue intake through implementation, review, deployment, and acceptance verification with minimal human re-intervention.

日本語の概要は準備中です。原文の説明を表示しています。

Practical UI refactoring and visual design review inspired by Refactoring UI by Steve Schoger and Adam Wathan. Use when an AI coding agent needs to improve an existing interface, audit visual polish, redesign a rough UI, review frontend code for hierarchy/spacing/typography/color/depth/image issues, or turn a plain implementation into a cleaner product-quality screen. Do not use for creating UI from scratch, scaffolding a new app, building a new landing page, or designing a new design system unless the user explicitly asks to review or refactor an existing interface.

日本語の概要は準備中です。原文の説明を表示しています。

Review the changes since a fixed point (commit, branch, tag, or merge-base) along two axes — Standards (does the code follow this repo's documented coding standards?) and Spec (does the code match what the originating issue/PRD asked for?). Runs both reviews in parallel sub-agents and reports them side by side. Use when the user wants to review a branch, a PR, work-in-progress changes, or asks to "review since X".

日本語の概要は準備中です。原文の説明を表示しています。

Comprehensive workflow for contributing features to open-source IDE and coding tool projects

日本語の概要は準備中です。原文の説明を表示しています。

Delegate coding to Claude Code CLI (features, PRs).

日本語の概要は準備中です。原文の説明を表示しています。

Delegate coding to OpenAI Codex CLI (features, PRs).

日本語の概要は準備中です。原文の説明を表示しています。

Delegate coding to OpenCode CLI (features, PR review).

日本語の概要は準備中です。原文の説明を表示しています。

Creates specs before coding. Use when starting a new project, feature, or significant change and no specification exists yet. Use when requirements are unclear, ambiguous, or only exist as a vague idea.

日本語の概要は準備中です。原文の説明を表示しています。

Recall project knowledge, past decisions, failures, and preferences when they can help a coding task. Capture changed files before responding.

日本語の概要は準備中です。原文の説明を表示しています。

Automatically format code files after every edit using Prettier and ESLint. Active in the background whenever Claude edits a file. Formatting is silent — no prompts, no output unless a formatter fails. Use when you want consistent formatting enforced automatically during a coding session.

日本語の概要は準備中です。原文の説明を表示しています。

Build GenAI and agentic apps with genai-tk (tclatos/genai-tk), a YAML-driven IoC toolkit over LangChain, DeepAgents, DeerFlow, and Prefect. Use this skill whenever the user mentions genai-tk, genai_tk, `cli init`, `cli agents run`, `LangchainAgent`, `create_harness`, `get_llm`, `global_config()`, `model_id@provider`, `agents:`/`agent_defaults:` profiles, `RetrieverFactory`, `cli workflow`, or BAML extraction. Also trigger for app_conf.yaml, GENAITK_PROFILE, CodeAct, OpenSandbox, decision models, or "the toolkit".

日本語の概要は準備中です。原文の説明を表示しています。

Re-run the analysis pipeline on all runs matching an RQ, reaggregate metrics, and propose findings updates against the fresh data. Trigger when the user says "reanalyze RQ-N", "reanalyse RQ-N", "Runs neu analysieren", or wants to refresh metrics/findings after a pipeline change (analyze-run.sh fix, adapter added, ESLint config).

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill to drive a research question (RQ) end-to-end: validate the RQ README, generate a fill batch-plan, start the Docker batch in the background, monitor progress, run aggregation, and propose findings updates. Trigger when the user says "RQ-N voranbringen", "run-rq", "fill RQ-N", "run RQ-N", "Forschungsfrage N starten", or names a specific RQ-N directory in research/.

日本語の概要は準備中です。原文の説明を表示しています。

TDD Refactor Phase - Improve code while keeping tests green using Simple Design Rules and APP mass

日本語の概要は準備中です。原文の説明を表示しています。

TDD Green Phase - Implement minimal code to make the failing test pass

日本語の概要は準備中です。原文の説明を表示しています。

TDD Test List Phase - Create a comprehensive test list covering every example and rule from the specification

日本語の概要は準備中です。原文の説明を表示しています。