「pack」の検索結果

Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, methylation, or other molecular phenotypes mediate the effect of genetic variants on disease. Use when testing whether a molecular...

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Generates a journal-ready cover letter from manuscript metadata, highlights, and journal-fit notes. Use when preparing an academic submission package and you need editor-facing language that clearly states novelty, relevance, declarations, and corresponding-author details.

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Generates complete reference-grounded single-drug adverse-effect network-pharmacology research designs from a user-provided drug, adverse event, and desired evidence depth. Always use this skill when a user wants to design, plan, or upgrade a conventional network-pharmacology study centered on one fixed drug and one fixed adverse-effect endpoint, using drug-target prediction, adverse-event target collection, overlap analysis, PPI hub prioritization, enrichment interpretation, molecular docking, and optional orthogonal transcriptomic or literature validation. Covers five study patterns (canonical hub-first, cardiotoxicity or electrophysiology-oriented, immune-inflammatory adverse effect, organ-toxicity pathway context, translational validation) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with a recommended primary plan, dependency/evidence map, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, verified-reference pack, and self-critical risk review.

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Generates complete tumor immune-infiltration-guided bulk-transcriptome diagnostic biomarker and machine-learning research designs from a user-provided cancer type and study direction. Always use this skill whenever a user wants to design, plan, or build a tumor bioinformatics study centered on differential expression, immune infiltration estimation, immune-linked module discovery, consensus feature selection, diagnostic modeling, nomogram construction, clinical association, and optional prognostic extension or validation. Covers five study patterns (immune-cell-first diagnostic workflow, immune-module-to-biomarker workflow, consensus-ML biomarker workflow, diagnostic-plus-prognostic hybrid workflow, translational validation workflow) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, reference literature pack, and self-critical risk review.

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Generates complete reference-grounded single-drug adverse-effect network-pharmacology research designs from a user-provided drug, adverse event, and desired evidence depth. Always use this skill when a user wants to design, plan, or upgrade a conventional network-pharmacology study centered on one fixed drug and one fixed adverse-effect endpoint, using drug-target prediction, adverse-event target collection, overlap analysis, PPI hub prioritization, enrichment interpretation, molecular docking, and optional orthogonal transcriptomic or literature validation. Covers five study patterns (canonical hub-first, cardiotoxicity or electrophysiology-oriented, immune-inflammatory adverse effect, organ-toxicity pathway context, translational validation) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with a recommended primary plan, dependency/evidence map, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, verified-reference pack, and self-critical risk review.

日本語の概要は準備中です。原文の説明を表示しています。

Drafts journal-ready cover letters for manuscript submission. Use when preparing a submission package, communicating the manuscript's contributions and journal fit to editors, or tailoring the novelty framing for a specific journal's scope. Also triggers on "write a cover letter for my paper", "draft a submission cover letter", "help me write to the editor", or "cover letter for [journal name]".

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Verify whether a proposed XQUIC bug issue is real by checking the cited RFC or Internet-Draft mechanism against the repository's actual source behavior, tracing any root cause to current file and line evidence, and returning a fail-closed boolean gate. Use when validating an issue draft, investigating a claimed QUIC, HTTP/3, QPACK, or MoQT protocol violation, or before issue-submit may publish an issue.

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Build and share third-party HTTP API emulators with emulate. Use to emulate an external provider, add a custom service plugin, model stateful vendor endpoints, configure custom seeds, or package an emulator. For an existing built-in service, use that service's skill.

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Create or update skills. Use when designing, structuring, or packaging skills with scripts, references, and assets.

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Migrate Java EE javax.* imports to Jakarta EE jakarta.* namespace. Use when upgrading to Spring Boot 3.x, migrating javax.persistence, javax.validation, javax.servlet imports, or fixing compilation errors after Jakarta EE transition. Covers package mappings, batch sed commands, and verification steps.

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Use Trivy vulnerability scanner in offline mode to discover security vulnerabilities in dependency files. This skill covers setting up offline scanning, executing Trivy against package lock files, and generating JSON vulnerability reports without requiring internet access.

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Download water level data from USGS using the dataretrieval package. Use when accessing real-time or historical streamflow data, downloading gage height or discharge measurements, or working with USGS station IDs.

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Transit Least Squares (TLS) algorithm for detecting exoplanet transits in light curves. Use when searching for transiting exoplanets specifically, as TLS is more sensitive than Lomb-Scargle for transit-shaped signals. Based on the transitleastsquares Python package.

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An overview of the python package for running the GaMMA earthquake phase association algorithm. The algorithm expects phase picks data and station data as input and produces (through unsupervised clustering) earthquake events with source information like earthquake location, origin time and magnitude. The skill explains commonly used functions and the expected input/output format.

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SCIP optimization with PySCIPOpt. Use when facing an optimization problem with an objective, hard constraints, soft penalties, integer decisions, routing, assignment, scheduling, allocation, packing, capacity, inventory, or service-level rules. Prefer modeling and solving the problem with PySCIPOpt when it is available.

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Guidance for analyzing network packet captures (PCAP files) and computing network statistics using Python, with tested utility functions.

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Personalize COG Second Brain workflow through role pack selection and vault initialization

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Master network protocol reverse engineering including packet analysis, protocol dissection, and custom protocol documentation. Use when analyzing network traffic, understanding proprietary protocols, or debugging network communication.

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Scaffold Python projects with uv, package structure, type checking, and tests. Use when starting applications, services, or libraries with a consistent development setup.

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Expert malware analyst specializing in defensive malware research, threat intelligence, and incident response. Masters sandbox analysis, behavioral analysis, and malware family identification. Handles static/dynamic analysis, unpacking, and IOC extraction. Use PROACTIVELY for malware triage, threat hunting, incident response, or security research.

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Master Julia 1.10+ with modern features, performance optimization, multiple dispatch, and production-ready practices. Expert in the Julia ecosystem including package management, scientific computing, and high-performance numerical code. Use PROACTIVELY for Julia development, optimization, or advanced Julia patterns.

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Master monorepo management with Turborepo, Nx, and pnpm workspaces to build efficient, scalable multi-package repositories with optimized builds and dependency management. Use when setting up monorepos, optimizing builds, or managing shared dependencies.

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Plan incremental dependency upgrades with breaking-change analysis, migration guidance, and regression testing. Use when updating packages while controlling compatibility risk.

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You are a dependency security expert specializing in vulnerability scanning, license compliance, and supply chain security. Analyze project dependencies for known vulnerabilities, licensing issues, outdated packages, and provide actionable remediation strategies.

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