3,002 件 ・ 関連度順
概要と使いどころ
Query bioRxiv/medRxiv preprints via REST API. Search by DOI, category, or date range; retrieve metadata (title, abstract, authors, category, DOI, version history) and PDFs. No auth. For peer-reviewed biomedical use pubmed-database; broader scholarly search use openalex-database.
日本語の概要は準備中です。原文の説明を表示しています。
Query UniProt REST API: search by gene/protein name, fetch FASTA, map IDs (Ensembl, PDB, RefSeq), access Swiss-Prot annotations. Use bioservices for multi-DB access; alphafold-database-access for structures.
日本語の概要は準備中です。原文の説明を表示しています。
GRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). Load matrix, filter by TFs, infer TF-target-importance links, save network. Dask-parallelized to single-cell scale. Core SCENIC component.
日本語の概要は準備中です。原文の説明を表示しています。
Parse HMDB (Human Metabolome Database) local XML for metabolite info, chemical properties, biological context, disease links, spectra, and cross-DB mapping. No REST API — uses ~6 GB XML download. Use drugbank-database-access for drugs; pubchem-compound-search for live lookups.
日本語の概要は準備中です。原文の説明を表示しています。
Biopython sequence analysis: parse FASTA/FASTQ/GenBank/GFF (SeqIO), NCBI Entrez (esearch/efetch/elink), remote/local BLAST, pairwise/MSA alignment (PairwiseAligner, MUSCLE/ClustalW), phylogenetic trees (Phylo). Use for gene family studies, phylogenomics, comparative genomics, NCBI pipelines. For PCR/restriction/cloning use biopython-molecular-biology; for SAM/BAM use pysam.
日本語の概要は準備中です。原文の説明を表示しています。
Molecular biology toolkit: sequence manipulation, FASTA/GenBank/PDB I/O, NCBI Entrez, BLAST automation, pairwise/MSA alignment, Bio.PDB, phylogenetic trees. Use for batch processing, custom pipelines, format conversion, PubMed/GenBank queries. For quick gene lookups use gget; for multi-service REST APIs use bioservices.
日本語の概要は準備中です。原文の説明を表示しています。
Time-to-event modeling with scikit-survival: Cox PH (elastic net), Random Survival Forests, Boosting, SVMs for censored data. C-index, Brier, time-dependent AUC; Kaplan-Meier, Nelson-Aalen, competing risks. Pipeline/GridSearchCV compatible. Use statsmodels for frequentist, pymc for Bayesian, lifelines for parametric.
日本語の概要は準備中です。原文の説明を表示しています。
protocols.io REST API: search and fetch wet-lab, bioinformatics, and clinical protocols by keyword, DOI, or category, with steps, reagents, materials, equipment, timing. Public access free; auth needed for private or publishing. Pair with opentrons-protocol-api or benchling-integration to execute.
日本語の概要は準備中です。原文の説明を表示しています。
Search the PRIDE Archive v3 REST API for proteomics datasets: discover projects by keyword + faceted filters (organism, instrument, disease, software), fetch project metadata, list and download RAW/PEAK/RESULT/FASTA files (with FTP/Aspera URLs), look up which projects mention a UniProt accession, and find similar projects. PRIDE v3 no longer exposes peptide/PSM-level identification endpoints — for spectrum-level data download the project's RESULT files. Use uniprot-protein-database for protein sequences; interpro-database for domain architecture.
日本語の概要は準備中です。原文の説明を表示しています。
omics-plotting: publication-style figure authoring for omics / bioinformatics results with matplotlib / seaborn. Read this before writing any plotting or figure code in any omics analysis — RNA-seq, proteomics, single-cell, variant, or database results — not only when a plot is explicitly requested: whenever an analysis will produce a figure, load this first and follow its recipes. Covers volcano, MA, expression / correlation heatmap, GSEA bar / dot plot, box / violin / bar / ridgeline, PCA / UMAP / t-SNE scatter, Kaplan–Meier, Manhattan / QQ / forest. Supplies a shared journal-ready style and copy-paste recipes so every figure looks like one consistent system. To combine several plots into ONE multi-panel composite figure, use the sibling `multipanel` skill.
日本語の概要は準備中です。原文の説明を表示しています。
Query Metabolomics Workbench REST API (4,200+ NIH studies) for metabolite ID, study discovery, RefMet standardization, m/z precursor searches, and gene/protein annotations. Quirks: compound input_item rejects `name` (use pubchem_cid/kegg_id/inchi_key/etc.); free-text → compound is a two-step refmet/match→refmet/name flow; moverz endpoint returns TSV text, not JSON. Use hmdb-database for local XML; pubchem-compound-search for general compound lookup.
日本語の概要は準備中です。原文の説明を表示しています。
Query InterPro REST API for protein domain architecture, family classification, and member-DB integration. Search entries, retrieve a protein's domains, list family members, get taxonomic distribution, link to PDB. Unifies Pfam, PANTHER, PIRSF, PRINTS, PROSITE, SMART, CDD, NCBIfam. Use uniprot-protein-database for sequences; pdb-database for 3D structures.
日本語の概要は準備中です。原文の説明を表示しています。
De novo and known TF motif enrichment in ChIP-seq/ATAC-seq peaks via HOMER. findMotifsGenome.pl finds over-represented patterns vs background; annotatePeaks.pl assigns context (TSS distance, gene, repeat). Use after MACS3 to identify enriched TFs, annotate peaks with nearest genes, and validate ChIP-seq via the target motif.
日本語の概要は準備中です。原文の説明を表示しています。
Get option chain data including calls and puts with strikes, bids, asks, volume, open interest, and implied volatility. Use when user asks about options, option prices, calls, puts, or option chain for a specific expiration date.
日本語の概要は準備中です。原文の説明を表示しています。
Bringing up a complete ROS2 system on a robot's onboard computer: systemd services, launch file composition, ordered startup, and production monitoring. Use this skill when configuring a robot to start ROS2 nodes on boot, writing systemd unit files for ROS2 launch, composing layered launch files for full robot stacks, setting up watchdog monitoring, configuring udev rules for deterministic device naming, or debugging boot-time race conditions. Trigger whenever the user mentions robot bringup, robot startup, systemd for ROS2, ROS2 on boot, launch file composition, robot boot sequence, udev rules for cameras or serial ports, automatic restart for ROS2 nodes, network configuration for multi-machine ROS2, log rotation for robots, graceful shutdown of robot stacks, or SSH-based remote debugging. Also trigger for sourcing workspaces in systemd, ordered startup with health checks, or running ROS2 systems as long-running production services. Covers systemd on Ubuntu 22.04/24.04 with ROS2 Humble, Iron, and Jazzy.
日本語の概要は準備中です。原文の説明を表示しています。
Provides patterns for unit testing `@ExceptionHandler` and `@ControllerAdvice` in Spring Boot applications. Validates error response formatting, mocks exceptions, verifies HTTP status codes, tests field-level validation errors, and asserts custom error payloads. Use when writing Spring exception handler tests, REST API error tests, or mocking controller advice.
日本語の概要は準備中です。原文の説明を表示しています。
Provides patterns for unit testing REST controllers using MockMvc and @WebMvcTest. Generates controller tests that validates request/response mapping, validation, exception handling, and HTTP status codes. Use when testing web layer endpoints in isolation for API endpoint testing, Spring MVC tests, mock HTTP requests, or controller layer unit tests.
日本語の概要は準備中です。原文の説明を表示しています。
Provides comprehensive NestJS framework patterns with Drizzle ORM integration for building scalable server-side applications. Generates REST/GraphQL APIs, implements authentication guards, creates database schemas, and sets up microservices. Use when building NestJS applications, setting up APIs, implementing authentication, working with databases, or integrating Drizzle ORM.
日本語の概要は準備中です。原文の説明を表示しています。
When the user wants to create, review, or restructure a fundraising pitch deck for seed or Series A. Also activates when the user mentions "deck", "pitch", "investor presentation", or "slide structure".
日本語の概要は準備中です。原文の説明を表示しています。
When the user needs to create, critique, or optimize a landing page for conversion -- including headline rewrites, CTA placement, layout restructuring, or full page copy drafts.
日本語の概要は準備中です。原文の説明を表示しています。
Push records from apps, services, devices, or scripts directly into Unity Catalog Delta tables with Zerobus Ingest: SDKs (Python, TypeScript, Go, Java, Rust, C++, .NET), REST, OTLP, MQTT, Arrow Flight, or Apache Kafka-compatible producer APIs, with no message bus to run. Use to stream events, telemetry, logs, IoT data, CDC, or columnar batches into Databricks in near real time; connect existing collectors and log shippers (OpenTelemetry, Debezium, Vector, Telegraf, Cribl); replace a message bus that only feeds the lakehouse; or debug Zerobus auth, schema, throughput, or delivery issues.
日本語の概要は準備中です。原文の説明を表示しています。
Apache Iceberg tables on Databricks — Managed Iceberg tables, External Iceberg Reads (fka Uniform), Compatibility Mode, Iceberg REST Catalog (IRC), Iceberg v3, Snowflake interop, PyIceberg, OSS Spark, external engine access and credential vending. Use when creating Iceberg tables, enabling External Iceberg Reads (uniform) on Delta tables (including Streaming Tables and Materialized Views via compatibility mode), configuring external engines to read Databricks tables via Unity Catalog IRC, integrating with Snowflake catalog to read Foreign Iceberg tables
日本語の概要は準備中です。原文の説明を表示しています。
Databricks development guidance including Python SDK, Databricks Connect, CLI, and REST API. Use when working with databricks-sdk, databricks-connect, or Databricks APIs.
日本語の概要は準備中です。原文の説明を表示しています。
Writes and restructures technical documentation - READMEs, tutorials, how-to guides, user guides, architecture docs, onboarding guides, runbooks and SOPs, troubleshooting guides, release notes, and knowledge base articles - grounded in the actual code or product, with commands and examples verified where possible. Use when the user asks to document a project, feature, system, or process, write or fix a README, explain a codebase to new developers, turn notes into a guide, or make existing docs clearer. For endpoint-by-endpoint API reference or OpenAPI specs, use api-documentation-writer; for CLAUDE.md or AGENTS.md files, use claude-md-writer.
日本語の概要は準備中です。原文の説明を表示しています。