「scan」の検索結果

Modular grid layout with card-like blocks, clear hierarchy, soft spacing, and subtle visual contrast for organized, scannable interfaces.

日本語の概要は準備中です。原文の説明を表示しています。

Design traceable accessibility checks that combine scanners with observable keyboard, focus, semantic, and assistive-technology behavior.

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Design authorized, bounded, reproducible security checks without turning scanner findings into penetration-test permission.

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Use when the user wants the existing codebase analyzed for planning — 'mapear o código', 'analisar o projeto', 'atualizar o contexto', 'map codebase' — or when a planning skill reports a missing or stale map. Runs a deterministic read-only evidence scan and writes codebase.md plus the architecture, conventions, testing and concerns context documents under .planning/feat/. Do NOT use for code review (feat-review), architecture decisions, or writing the project instructions file (feat-setup).

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Two-phase memory hygiene. Phase 1: scan external Claude Code memory (~/.claude/projects/<slug>/memory/) for durable rules to migrate into the repo and entries already duplicated by repo atoms. Phase 2: audit in-repo memory/, CLAUDE.md, docs/architecture/, and docs/sections/ for dead links, duplication, drift, and bloat.

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Autonomous bug-hunt workflow for the Humans repository. Use when the user wants Codex to scan for real bugs, work in a dedicated git worktree branched from origin/main, commit each fix separately, push progress, and continue until diminishing returns.

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Daily per-section review cycle driving a section toward the smallest, clearest form that still does everything it does today. Selects its section live each run (scripted), inventories every file, derives the target shape before any scan, works parallel reading threads into one ranked list and strikes it on a 2-3h budget. One PR per run; each run's report and Needs-Peter queue live in its own docs/health/runs/ file; 'resume' applies Peter's answers later. Use for the morning section-improvement run, 'doctor <section>', or 'run section doctor'.

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Orchestrates legacy AEM (6.x, AMS, on-prem) to AEM as a Cloud Service migration using BPA CSV or cache, CAM/MCP target discovery, and one-pattern-per-session workflow. Use for BPA/CAM findings, Cloud Service blockers, or fixes for scheduler, ResourceChangeListener, replication, EventListener, OSGi EventHandler, DAM AssetManager, HTL data-sly-test lint. OSGi configs → Cloud Manager — scan ui.config, .cfg.json, secrets, $[secret:]/$[env:] — agent follows references/osgi-cfg-json-cloud-manager.md when prompted. Transformation steps live in the best-practices skill—read it and the right references/ modules before editing code.

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Audit and update metadata across multiple AEM Edge Delivery Services pages. Scans pages via the query index, identifies missing or inconsistent metadata (titles, descriptions, og tags, robots), and generates a corrected bulk metadata spreadsheet. Use when standardizing metadata across a site, preparing for launch, or fixing SEO issues at scale.

日本語の概要は準備中です。原文の説明を表示しています。

Scan an AEM Edge Delivery Services page for WCAG 2.1 AA accessibility violations and generate specific fixes. Identifies missing alt text, heading hierarchy issues, link text problems, color contrast concerns, and EDS-specific accessibility patterns. Use when fixing accessibility issues, preparing for compliance audits, or remediating WCAG violations.

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Use when finishing a feature, fixing a bug, before committing React code, or when the user asks to scan, triage, or clean up React diagnostics. Covers lint, accessibility, bundle size, architecture, regression checks, and local triage with React Doctor.

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Use when finishing a feature, fixing a bug, before committing React code, or when the user types `/doctor`, asks to scan, triage, or clean up React diagnostics. Covers lint, accessibility, bundle size, architecture. Includes a regression check and a full local-triage workflow that fetches the canonical playbook.

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Whole-repo audit for over-engineering. Like ponytail-review, but scans the entire codebase instead of a diff: a ranked list of what to delete, simplify, or replace with stdlib/native equivalents. Use when the user says "audit this codebase", "audit for over-engineering", "what can I delete from this repo", "find bloat", "ponytail-audit", or "/ponytail-audit". One-shot report, does not apply fixes.

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Cross-Reference 進度掃描器 — 自動掃描 assets/scripts/**/*.ts 與 tests/*.ts，比對 cross-ref-code.md B-1 表格，產生進度差異報告。USE FOR: 進度掃描、cross-ref 更新。DO NOT USE FOR: 程式碼編輯、UI layout 調整。

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Orchestrator for the learn-from suite - auto-detects source type (academic paper, GitHub repo, blog/web article, or in-conversation learnings) and routes to the correct sub-skill for credibility check, security scan, insight extraction, and application. Load when the user says "learn from", "learn from this", "extract insights from", "apply learnings from", "what can we learn from", or provides a URL, file path, or pasted content that should be ingested as knowledge. Single entry point for all learning workflows.

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Extract actionable patterns, architecture decisions, code conventions, and skill-relevant insights from GitHub/GitLab repositories. Assess repo credibility, run the full security scan pipeline, and apply findings to existing skills, new skills, or the current project. Load when the user asks to learn from a repo, extract patterns from a codebase, study a repository, or analyze a repo for reusable techniques. Also triggers on "learn from this repo", "learn from this repository", "what can we learn from this codebase", "extract patterns from this repo", "study this repo".

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Execute comprehensive web application security testing using Burp Suite's integrated toolset, including HTTP traffic interception and modification, request analysis and replay, automated vulnerability scanning, and manual testing workflows.

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Meta-skill que orquestra todos os agentes do ecossistema. Scan automatico de skills, match por capacidades, coordenacao de workflows multi-skill e registry management.

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Predict peptide-MHC class I binding and natural presentation with MHCflurry, NetMHCpan-4.1, and MixMHCpred to nominate candidate CD8 T-cell epitopes. Covers the binding-affinity (BA) vs eluted-ligand (EL/presentation) distinction, why %Rank beats raw nM for cross-allele work, the MS abundance bias that misranks low-expression neoantigens, allele-coverage inequity, and length bias. Use when scanning a protein or peptide set for class I epitopes, scoring neoantigen candidates, or choosing a binding predictor. For CD4/HLA class II see mhc-class-ii-prediction.

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Normalizes and transforms RNA-seq count matrices for DE, visualization, clustering, and ML. Covers between-sample (TMM, TMMwsp, RLE/median-of-ratios, upper quartile), within-sample (TPM, FPKM/RPKM), variance-stabilizing (VST, rlog, log-CPM), GC-content correction (cqn, EDASeq), and single-cell (scran deconvolution, scanpy normalize_total). Encodes the composition-bias rationale, the "most genes not DE" assumption and its catastrophic failure modes (MYC amplification, apoptosis, viral host shutoff, prokaryotic stress), the "lengthScaledTPM is not TPM" naming trap, the "TPM is not for DE" rule, the blind=TRUE vs FALSE decision, ERCC spike-in normalization (SBN), and the single-cell zero-inflation breakdown of TMM/RLE. Use when choosing or applying normalization, debugging shifted-MA-plot diagnostics, handling zero-heavy single-cell data, or correcting GC bias.

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Reads, inspects, and writes Flow Cytometry Standard (FCS) files from conventional, spectral, and mass cytometry (CyTOF), and parses FlowJo/Cytobank/Diva workspaces. Covers FCS 2.0/3.0/3.1/3.2 internals ($PnE linear-vs-log, $DATATYPE, $SPILLOVER vs SPILL vs $COMP, $TIMESTEP), channel/parameter metadata, the silent linearize/truncate defaults, and R (flowCore, flowWorkspace, CytoML) plus Python (FlowKit, readfcs) readers. Use when loading flow or mass cytometry data, mapping detector channels to antibodies, extracting the event matrix, choosing a reader, or bridging FCS to the scanpy/AnnData ecosystem before preprocessing.

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Stores and operates on sparse expression matrices for single-cell and large bulk RNA-seq, covering dgCMatrix/dgRMatrix/dgTMatrix when-each-is-fast, the dgCMatrix (CSC, R) <-> CSR (Python) implicit transpose, AnnData (cells-rows) <-> SingleCellExperiment (cells-cols) orientation flip, HDF5/h5ad vs Zarr cloud-native shift, HDF5SummarizedExperiment + DelayedArray for out-of-memory bulk, scanpy backed mode for large h5ad, the ~10-15% density crossover where dense beats sparse, 10X format proliferation (MTX vs CellRanger H5 vs h5ad), the dense-conversion memory blow-up, and Dask + Zarr for consortium-scale matrices. Use when choosing sparse format, working with single-cell-sized matrices, importing/exporting 10X, debugging R/Python interop transposes, processing matrices too large for RAM, or building cloud-native pipelines.

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Analyzes base-editing screens for variant function. Covers library design (Sanson 2020 GRACE, Hanna 2021 BRCA1/2 SNV scanning, Cuella-Martin 2021), CBE vs ABE chemistry choice (BE3/BE4 vs ABE7.10/ABE8.20/ABE8e), editing-window math (positions 4-8 from PAM-distal end, wider for ABE8e), bystander-edit quantification and the variant-call ambiguity it creates, sgRNA-efficiency filtering before hit calling, indel byproduct interpretation, the substitution-vs-indel diagnostic, variant annotation against ClinVar / COSMIC, and the Broad be-validation-pipeline. Use when designing a BE variant screen, choosing CBE vs ABE for a specific edit, interpreting bystander-confounded hits, distinguishing functional signal from indel artifact, integrating CRISPResso2 output with screen scoring, or deciding BE vs PE for SNV installation.

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Detect positive (diversifying / episodic / pervasive) selection using codon dN/dS frameworks. Implements PAML codeml site models (M0/M1a/M2a/M7/M8/M8a), branch models, branch-site model A (Zhang 2005), and HyPhy methods (BUSTED, BUSTED-S, BUSTED-MH, BUSTED-PH, MEME, FEL, FUBAR, aBSREL, SLAC, RELAX, GARD, FUBAR-MH). Includes McDonald-Kreitman framework (asymptotic alpha, impMKT, polyDFE, DFE-alpha, GRAPES) for within-species + divergence inference, RERconverge for trait-correlated rate shifts, CSUBST for convergent substitution, and PhyloAcc for accelerated noncoding evolution. Use when testing adaptive evolution at codons, branches, or full gene; running GARD recombination pre-screen; controlling alignment-error and gBGC false positives; reconciling PAML vs HyPhy results; or performing genome-scale selection scans.

日本語の概要は準備中です。原文の説明を表示しています。