「models」の検索結果

Builds complete, optimized Claude prompts and Project scaffolds from task descriptions. Use when building, designing, creating, or structuring a Claude prompt or system prompt. Trigger on: "build me a prompt," "compile a prompt for," "create a system prompt," "write a Claude prompt," "design a prompt for," "help me write a prompt," "scaffold a Claude Project," "design a Project for." Uses a four-stage methodology (Parse, Select, Construct, Validate) and a tested 5-layer architecture (Identity, Objective, Context, Reasoning, Output + Quality Control). In Project Mode, the Compiler is global-layer-aware — checks User Preferences, installed Skills, and MCP Connectors to avoid redundancy and flag gaps. Do NOT use for auditing existing prompts (use rootnode-prompt-validation if available) or diagnosing existing Projects (use rootnode-project-audit if available). Run on Opus 5 or Sonnet 5 at `high` effort (both defaults); depth reduces on legacy models.

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Analyzes Claude Project context budget under the automatic-RAG-by-window model: knowledge files vs. threshold-exempt overhead (Skills, MCPs, CI, Memory). Two modes: Quick Diagnostic and Full Budget Audit. Use when user says "check my context budget," "how much context am I using," "is my project too big," "optimize my token usage," "tier my files," "optimize for RAG," "improve retrieval quality," "should I keep compressing," "am I over-compressing," "should I accept RAG mode." Also trigger on context pressure symptoms: "Claude forgets my instructions," "responses getting generic," "content not found in my knowledge files." Also use when a project audit scores Knowledge Architecture ≤ 3. Do NOT use for content placement decisions (use rootnode-memory-optimization if available), full project audits (use rootnode-project-audit if available), or behavioral tuning (use rootnode-behavioral-tuning if available). Run on Opus 5 or Sonnet 5 at `high` effort (both defaults); depth reduces on legacy models.

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Comprehensive audit of a user's entire Claude environment — combines Project audit (six-dimension Project Scorecard, seven anti-patterns) with Global audit (six-dimension Global Layer Scorecard) plus Cross-Layer Alignment Check across all nine layers and Evolutionary Recommendations across four pathways. Produces a unified action plan. Use when user says "full audit of everything," "audit my entire Claude setup," "full stack audit," "comprehensive review of my project and preferences," "check everything," or wants the complete health check of both a specific Project AND their global configuration. Also use when a project audit reveals cross-layer issues that require full-stack visibility. Do NOT use for auditing only a Project (use rootnode-project-audit if available) or only global layers (use rootnode-global-audit if available). Do NOT use for single prompt evaluation (use rootnode-prompt-validation if available). Run on Opus 5 or Sonnet 5 at `high` effort (both defaults); depth reduces on legacy models.

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Audits and scores Claude Projects using a six-dimension Scorecard with anchored 1-5 rubrics and detects seven structural anti-patterns. When global layer info is provided, adds cross-layer alignment findings. Use when user says "audit my project," "review my custom instructions," "score my project," "evaluate my Claude project," "improve my system prompt," "what's wrong with my project," "why is my project underperforming." Also trigger on symptom-phrased: "my project doesn't work right," "Claude is inconsistent in my project," "my Project used to work and now doesn't." Also use when the user pastes Custom Instructions asking why output is poor or generic. Do NOT use when the user's primary request is a global-layer audit (use rootnode-global-audit if available), single-prompt evaluation (use rootnode-prompt-validation if available), or Memory-only optimization (use rootnode-memory-optimization if available). Run on Opus 5 or Sonnet 5 at `high` effort (both defaults); depth reduces on legacy models.

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Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein and protein-ligand systems with PDBFixer, choose force fields and water models (AMBER14, CHARMM36m, ff19SB, GAFF2, TIP3P), solvate and add ions, run energy minimization, NVT/NPT equilibration and production MD on GPU, then analyze trajectories for RMSD, RMSF, radius of gyration, hydrogen bonds, native contacts, PCA and free energy surfaces. Use this skill for protein stability under mutation, ligand binding-mode and residence-time questions, conformational sampling, membrane proteins, and disordered ensembles. Also trigger on OpenMM, MDAnalysis, mdtraj, Simulation.step, LangevinMiddleIntegrator, PDBFixer, DCD or XTC trajectory, RMSD analysis, or production MD.

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Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molecular dynamics. Use when the user mentions Tamarind or tamarind.bio, wants to run any of these open-source tools in the cloud, references app.tamarind.bio/api or the x-api-key header, or needs to submit batches of sequences for structural or biophysical characterization.

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Generate and optimise novel small molecules with REINVENT 4 — de novo sampling from a chemical language model, scaffold decoration with LibInvent, fragment linking with LinkInvent, and similarity-constrained analogue generation with Mol2Mol. Use this skill to set up reinforcement-learning or curriculum runs, compose a multi-parameter scoring function from docking scores, predictive models, and physicochemical desirability, and read the resulting sampled sets. Also trigger on REINVENT, LibInvent, LinkInvent, Mol2Mol, scaffold hopping, R-group replacement, linker design, chemical language model, or reinforcement-learning molecule optimisation.

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Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained models, diverse molecular representations. For ready-made ADMET numbers without training a model use admet-prediction; for benchmark datasets and task-aware splits use pytdc.

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Retrieve protein sequences, annotation, and structures from UniProtKB, the RCSB PDB, and AlphaFold DB. Use this skill to resolve a gene or protein name to a UniProt accession, pull sequences and FASTA files, find binding sites and domains, search the PDB by UniProt accession, sequence, ligand, or text, download mmCIF/PDB coordinates and biological assemblies, fetch AlphaFold models with their pLDDT confidence, and check whether a structure is actually usable before docking or simulating it. Also trigger on UniProt accessions, PDB ids, rest.uniprot.org, search.rcsb.org, files.rcsb.org, alphafold.ebi.ac.uk, id mapping, SEQRES, or missing residues.

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Register trained models in MLflow Model Registry with version control, implement stage transitions (Staging, Production, Archived) with approval workflows, and manage model lineage with comprehensive metadata and deployment tracking. Use when promoting a trained model from experimentation to production, managing multiple model versions across development stages, implementing approval workflows for governance, rolling back to previous versions, or auditing model changes for compliance.

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Build and analyze discrete or continuous Markov chains including transition matrix construction, state classification, stationary distribution computation, and mean first passage times. Use when modeling a memoryless system with observed transition counts or rates, computing long-run steady-state probabilities, determining expected hitting times or absorption probabilities, classifying states as transient or recurrent, or building a foundation for hidden Markov models or reinforcement learning MDPs.

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Implement comprehensive model drift monitoring using Evidently AI, statistical tests (PSI, KS), and custom metrics to detect data drift and concept drift in production ML systems. Set up automated alerting and reporting workflows to catch degradation before it impacts business metrics. Use when production models show unexplained performance degradation, when new data distributions differ from training data, when seasonal shifts affect input features, or when regulatory requirements mandate model monitoring.

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Perform capacity planning using historical metrics and growth models. Use predict_linear for forecasting, identify resource constraints, calculate headroom, and recommend scaling actions before saturation. Use before seasonal traffic spikes or product launches, during quarterly capacity reviews, when resource utilization trends upward, or before budget planning cycles.

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Fit cognitive drift-diffusion models (Ratcliff DDM) to reaction time and accuracy data with parameter estimation (drift rate, boundary separation, non-decision time), model comparison, and parameter recovery validation. Use when modeling binary decision-making with reaction time data, estimating cognitive parameters from experimental data, comparing sequential sampling model variants, or decomposing speed-accuracy tradeoff effects into latent cognitive components.

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Add an external probabilistic classifier to a decision path without letting it take the path over. Covers finding the externally-graded rows you are already logging, measuring the confidence separation between the overrides it got right and the ones it got wrong, choosing an operating point your data licenses, failing open at the call site, and proving the whole arrangement offline with no API key. Applies to any service returning a score you can order — TypeSafe AI's System One models (Jev) are the worked example. Most of the method transfers to a local model or a second heuristic, with the parts that do not called out where they arise. Use when a rule-based path is wrong often enough to hurt, when someone proposes replacing a heuristic with a model, when a confidence threshold needs a defensible value, or when an oracle already in production has never been graded.

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Build a feature store using Feast for centralized feature management, configure offline and online stores for batch and real-time serving, define feature views with transformations, and implement point-in-time correct joins for ML pipelines. Use when managing features for multiple ML models, ensuring training-serving consistency, serving low-latency features for real-time inference, reusing feature definitions across projects, or building a feature catalog for discovery and governance.

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Analyze pre-trained generative diffusion models (Stable Diffusion, DALL-E, Flux) by computing quality metrics (FID, IS, CLIP score, precision/recall), inspecting noise schedules, extracting and visualizing attention maps, and probing latent spaces. Use when evaluating a pre-trained generative diffusion model's output quality, comparing noise schedule variants, analyzing cross-attention patterns for text-conditioned generation, interpolating between latent codes, or detecting out-of-distribution inputs.

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Django web framework conventions: app layout, settings split (base/local/production), URLconf with app namespacing, CBV and DRF ViewSets, DRF serializers and permissions, form validation, signals, Django admin registration, and middleware. Activated automatically by django-plugin/stack.md. Works alongside python-foundation:python-conventions and django-plugin:django-orm-patterns. Use this skill to: - Structure a Django project with multiple apps and correct URLconf hierarchy. - Write CBVs and DRF ViewSets with appropriate permissions and serializers. - Configure settings correctly for different environments. - Use signals for decoupled event handling between apps. - Register models in Django admin with useful list_display and search_fields. Do NOT use this skill for: - Django ORM model field finalization and migration patterns — see django-plugin:django-orm-patterns. - Python language idioms (type hints, dataclasses, enums) — see python-foundation:python-conventions. - Testing patterns — see python-foundation:pytest-testing.

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Framework-agnostic SQLAlchemy 2.0 core shared by fastapi-plugin and flask-plugin: declarative mapped classes with Mapped/mapped_column, column type selection, relationships with explicit lazy loading and cascades, 2.0-style select() querying, transaction/flush discipline, and Alembic-agnostic migration metadata rules. Framework plugins layer their delta skills (async sessions for FastAPI, Flask-SQLAlchemy integration for Flask) on top of this skill. Use this skill to: - Write SQLAlchemy 2.0 declarative models with Mapped[T] annotations and mapped_column(). - Pick correct column types (String(N), Numeric, DateTime(timezone=True), Uuid, Enum). - Define relationships with explicit lazy loading strategy and cascade settings. - Query with 2.0-style select() statements and manage flush vs commit boundaries. - Keep model metadata visible to Alembic autogenerate. Do NOT use this skill for: - FastAPI async engine/session lifecycle — see fastapi-plugin:sqlalchemy-patterns. - Flask-SQLAlchemy extension setup and Flask-Migrate — see flask-plugin:sqlalchemy-patterns. - Python idioms — see python-foundation:python-conventions.

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Use when a human-curated dbt model index must guide BigQuery SQL for a warehouse question. Not for discovering undocumented models or executing warehouse changes.

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Use when invoked to apply an invariant-first, fail-fast, special-case-eliminating baseline. Not for domain models in types: use type-driven. Not for design-by-contract: use contract-driven.

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Investigate a bounded Proto UI Contract, Prototype, Module, Host Capability, Adapter, schema, or ownership question and turn a genuinely unresolved direction into one semantic decision packet. Use for spec brainstorming, admission questions, competing semantic models, uncataloged behavior, or unresolved cross-layer boundaries.

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Read project data documentation (data dictionaries, dbt manifests, model docs, column descriptions, lineage, metric definitions) before writing analytics SQL. Use for mapping business and product terms to concrete models and columns.

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Azure Cosmos DB performance optimization and best practices guidelines for NoSQL, partitioning, queries, SDK usage, and vector search. Use when writing, reviewing, or refactoring code that interacts with Azure Cosmos DB, designing data models, optimizing queries, or implementing high-performance database operations.

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