「pipeline」の検索結果

Medical image segmentation with nnU-Net's self-configuring framework — auto-selects architecture, preprocessing, training for any modality. CT, MRI, microscopy, ultrasound in 2D, 3D full-res, 3D low-res, cascade. Pipeline: convert → plan/preprocess → train (5-fold CV) → best config → predict → ensemble. Use when classical segmentation fails and annotated data exists.

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Predict RNA secondary structure, MFE folding, base-pair probabilities, RNA-RNA interactions via ViennaRNA Python bindings. Pipeline: sequence → MFE → partition function and pair-probability matrix → dot-bracket → duplex. Use for siRNA/sgRNA targeting, ribozyme design, RNA accessibility. Use RNAfold CLI for batch use without Python.

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Molecular biology toolkit: sequence manipulation, FASTA/GenBank/PDB I/O, NCBI Entrez, BLAST automation, pairwise/MSA alignment, Bio.PDB, phylogenetic trees. Use for batch processing, custom pipelines, format conversion, PubMed/GenBank queries. For quick gene lookups use gget; for multi-service REST APIs use bioservices.

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Biopython sequence analysis: parse FASTA/FASTQ/GenBank/GFF (SeqIO), NCBI Entrez (esearch/efetch/elink), remote/local BLAST, pairwise/MSA alignment (PairwiseAligner, MUSCLE/ClustalW), phylogenetic trees (Phylo). Use for gene family studies, phylogenomics, comparative genomics, NCBI pipelines. For PCR/restriction/cloning use biopython-molecular-biology; for SAM/BAM use pysam.

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Computational pathology toolkit for whole-slide images (WSIs): load slides, extract tiles, stain normalization, nuclear segmentation, feature extraction, and ML training. Supports H&E and multiplex. For end-to-end pipelines from raw WSIs to quantitative outputs.

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MaxQuant + Perseus proteomics pipeline: run MaxQuant for LFQ and SILAC; parse proteinGroups.txt in Python; filter contaminants/decoys; log2 + median-normalize; impute MNAR; t-test with FDR; volcano plot; GO/pathway enrichment. Use Proteome Discoverer for Thermo-native processing; FragPipe/MSFragger for GPU-accelerated DB search.

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Advanced GitHub Actions workflow automation with AI swarm coordination, intelligent CI/CD pipelines, and comprehensive repository management

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Testing strategies, patterns, and tools for robotics software. Use this skill when writing unit tests, integration tests, simulation tests, or hardware-in-the-loop tests for robot systems. Trigger whenever the user mentions testing ROS nodes, pytest with ROS, launch_testing, simulation testing, CI/CD for robotics, test fixtures for sensors, mock hardware, deterministic replay, regression testing for robot behaviors, or validating perception/planning/control pipelines. Also covers property-based testing for kinematics, fuzz testing for message handlers, and golden-file testing for trajectories.

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Architecture patterns, design principles, and proven recipes for building robust robotics software. Use this skill when designing robot software architectures, choosing between behavioral frameworks, structuring perception-planning-control pipelines, implementing state machines, designing safety systems, or architecting multi-robot systems. Trigger whenever the user mentions behavior trees, finite state machines, subsumption architecture, sensor fusion, robot safety, watchdogs, heartbeats, graceful degradation, hardware abstraction layers, real-time constraints, or software architecture for robots. Also applies to sim-to-real transfer, digital twins, and robot fleet management.

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Operational knowledge for the daily-brief digest pipeline (this project). RSS/API fetchers, pluggable LLM enrichment (default claude CLI on Max; also anthropic/openai/deepseek/minimax API), trading section, HTML rendering, cross-platform scheduler integration (Windows Task Scheduler / macOS launchd / Linux cron). Load when the user asks about running daily / regenerating sections / debugging a failed run / adding or disabling sources / LLM quota / scheduler / why a tab shows wrong data / why a source failed / switching LLM backend. Always prefer the documented npm commands over re-implementing logic. Diagnose by reading logs/daily-*.log first, then logs/llm-calls.jsonl for LLM-side issues.

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Provides patterns to deploy ECS tasks and services with GitHub Actions CI/CD. Use when building Docker images, pushing to ECR, updating ECS task definitions, deploying ECS services, integrating with CloudFormation stacks, configuring AWS OIDC authentication for GitHub Actions, and implementing production-ready container deployment pipelines. Supports ECS deployments with proper security (OIDC or IAM keys), multi-environment support, blue/green deployments, ECR private repositories with image scanning, and CloudFormation infrastructure updates.

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Provides comprehensive patterns for deploying Next.js applications to production. Use when configuring Docker containers, setting up GitHub Actions CI/CD pipelines, managing environment variables, implementing preview deployments, or setting up monitoring and logging for Next.js applications. Covers standalone output, multi-stage Docker builds, health checks, OpenTelemetry instrumentation, and production best practices.

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Provides comprehensive Turborepo monorepo management guidance for TypeScript/JavaScript projects. Use when creating Turborepo workspaces, configuring turbo.json tasks, setting up Next.js/NestJS apps, managing test pipelines (Vitest/Jest), configuring CI/CD, implementing remote caching, or optimizing build performance in monorepos

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Provides Retrieval-Augmented Generation (RAG) implementation patterns with LangChain4j for Java. Generates document ingestion pipelines, embedding stores, vector search, and semantic search capabilities. Use when building chat-with-documents systems, document Q&A over PDFs or text files, AI assistants with knowledge bases, semantic search over document repositories, or knowledge-enhanced AI applications with source attribution.

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Provides integration patterns for LangChain4j with Spring Boot. Configures AI model beans, sets up chat memory with Spring context, integrates RAG pipelines with Spring Data, and handles auto-configuration, dependency injection, and Spring ecosystem integration. Use when embedding LangChain4j into Spring Boot applications, building Java LLM applications with @Bean configuration, or setting up Spring AI patterns.

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Implements document chunking, embedding generation, vector storage, and retrieval pipelines for Retrieval-Augmented Generation systems. Use when building RAG applications, creating document Q&A systems, or integrating AI with knowledge bases.

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Use when a result is surprising, impossible, contradicts a sanity check, a pipeline fails, a model won't converge, or a replication fails - before adjusting anything

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Use when your human partner has explicitly opted into exploratory or feasibility mode - a compute-heavy simulation, an unproven pipeline, an unbenchmarked solver, an untested cluster job - or when whether the work can run at all is still unknown, when a plan's largest configuration has never been executed, when a memory or wall-clock ceiling is estimated rather than measured, or when someone proposes pre-registering over runs that have never happened

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Create n8n workflow for daily task assignment from PTO engineer to foreman via Telegram bot with status reporting.

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Build n8n pipeline for automated cost estimation from Revit/IFC using DDC CWICR database and LLM classification.

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Security review checklist for construction software systems. Use when building integrations, APIs, data pipelines, or dashboards for construction projects.

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Create Apache Airflow DAGs for construction data pipelines. Orchestrate ETL, validation, and reporting workflows.

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Automate construction data workflows. Build ETL pipelines and DAG workflows for recurring tasks.

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Automated pipeline for retraining ML models with new construction data. Monitor model drift, trigger retraining, and validate model performance.

日本語の概要は準備中です。原文の説明を表示しています。