「agent-skills」の検索結果

Design, implement, and validate reproducible machine-learning pipelines spanning data preparation, training, evaluation, registry, and deployment gates. Use when the user requests an ML pipeline, needs to turn model scripts into an orchestrated workflow, or provides pipeline components that must be connected safely.

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Design and operate bounded multi-agent workflows with task decomposition, dependency graphs, ownership, handoff contracts, shared-state controls, approvals, recovery, and synthesis. Use when a task contains genuinely independent workstreams, specialized roles, parallel research or implementation, reviewer-worker loops, or coordination problems that one agent should not execute sequentially.

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Implement OAuth 2.0 authentication flows including authorization code with PKCE, client credentials, and device code for secure API integration. Use when the user requests oauth 2 0 setup or provides relevant inputs for this workflow.

日本語の概要は準備中です。原文の説明を表示しています。

Create clear, effective charts and dashboards from structured data using matplotlib, seaborn, and plotly. Use when the user requests data visualization or provides relevant inputs for this workflow.

日本語の概要は準備中です。原文の説明を表示しています。

Train machine learning models end-to-end, covering data loading, preprocessing, architecture selection, training loops, validation, and checkpointing. Use when the user requests model training or provides relevant inputs for this workflow.

日本語の概要は準備中です。原文の説明を表示しています。

Design and verify auditable human oversight, approval gates, escalation paths, and safe state transitions for AI agent workflows. Use when deciding which agent actions require review, adding approve/reject or dual-control flows, preventing unauthorized autonomous effects, creating decision records, reducing rubber-stamping, or recovering safely from rejected, expired, or failed actions.

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Perform systematic exploratory data analysis to understand dataset structure, distributions, relationships, and anomalies before modeling. Use when a dataset is new, its quality is unknown, or the user requests open-ended profiling; use data-analysis instead for a defined hypothesis or decision question.

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Optimize a complete candidate context package by deduplicating, filtering, ordering, and allocating its token budget. Use when retrieved or assembled material is noisy or exceeds the useful context budget; use context-ranking for scoring chunks and context-compression for shrinking selected content.

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Set up and manage data labeling workflows using manual annotation tools, semi-automated pipelines, active learning, and programmatic weak supervision. Use when the user requests data labeling or provides relevant inputs for this workflow.

日本語の概要は準備中です。原文の説明を表示しています。

Deploy trained machine learning models as production-ready services using REST APIs, containers, serverless functions, and orchestration platforms. Use when the user requests model deployment or provides relevant inputs for this workflow.

日本語の概要は準備中です。原文の説明を表示しています。

Analyze datasets to answer defined questions through statistical methods, trend identification, hypothesis testing, and correlation analysis. Use when the user needs evidence-backed findings or decisions from data; use exploratory-data-analysis instead for open-ended first-pass profiling before questions are defined.

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Place trusted contextual information into prompts or agent state using explicit boundaries, provenance, and templates. Use when relevant context has already been selected and must be inserted safely; use context-retrieval to find it or context-optimization to choose and order it.

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Classify, prioritize, and route incoming support tickets by extracting intent and entities, assigning severity, and generating initial responses. Use when the user requests ticket triage or provides relevant inputs for this workflow.

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Computes and interprets treatment effect measures (OR, RR, RD, HR, NNT) with calibrated confidence intervals (Wilson, Newcombe, Miettinen-Nurminen, MOVER, profile likelihood, Bender NNT) and reports marginal vs conditional estimands per FDA 2023 covariate adjustment guidance. Use when reporting treatment effects in confirmatory trials, comparing effect sizes across studies, or constructing forest plots.

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Maps GWAS-implicated loci to candidate effector (causal) genes by integrating variant-to-gene (V2G) features via Open Targets L2G (Mountjoy 2021), MAGMA gene-based association (de Leeuw 2015), FUMA SNP2GENE, cS2G combined SNP-to-gene scores (Gazal 2022), Polygenic Priority Scores (PoPS, Weeks 2023), FLAMES, INQUISIT, DEPICT, and enhancer-gene predictors (ABC, ENCODE-rE2G). Use when narrowing a GWAS lead locus to a candidate causal gene, picking between proximity, eQTL-based, and similarity-based prioritizers, integrating multi-evidence streams (fine-mapping, colocalization, ABC enhancer-gene, distance, chromatin), reconciling discordant L2G vs PoPS calls, prioritizing tissue-specific eQTL evidence, or triangulating across at least three independent lines of evidence for a publication-grade effector-gene nomination.

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Predict enhancer-gene regulatory connections from ATAC-seq using ABC, ENCODE-rE2G, HiChIP, or Cicero. Use when linking distal enhancers to target genes, choosing between contact-aware (ABC, ENCODE-rE2G), accessibility-only (Cicero), and orthogonal (HiChIP H3K27ac, EpiMap) approaches, validating predictions against CRISPRi-FlowFISH gold-standard, or building cell-type-specific regulatory maps for fine-mapping or therapeutic target discovery.

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Visualize enrichment results using enrichplot package functions. Use when creating publication-quality figures from clusterProfiler results. Covers dotplot, barplot, cnetplot, emapplot, gseaplot2, ridgeplot, and treeplot.

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Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species ortholog/paralog calls. Use when pulling Ensembl-native data (Ensembl Gene IDs, version-pinned releases, archive endpoints for reproducibility), gene/transcript/exon structure with stable IDs, or VEP for variant annotation. Encodes the 15 req/sec rate limit, archive (e110.rest.ensembl.org) for reproducibility, Ensembl divisions (vertebrates / plants / fungi / metazoa / bacteria), and the symbol-vs-ID stability problem.

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Retrieve records from NCBI databases using Biopython Bio.Entrez (EFetch, ESummary). Use when downloading sequences, fetching GenBank/GenPept records, getting document summaries, parsing nested XML, navigating GI deprecation, choosing between rettype+retmode combinations, and parsing into Biopython SeqRecord/SwissProt objects. Covers nucleotide, protein, gene, pubmed, sra, gds, taxonomy, snp, clinvar.

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Find cross-database references between NCBI databases using Biopython Bio.Entrez (ELink). Use when navigating gene to protein/structure, sequence to publication, PubMed to GEO, BioProject to SRA runs, or discovering all link relationships for a record. Covers linkname semantics, cmd= variants, asymmetric link warnings, neighbor_history for >200 input IDs, and per-database link tables.

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Search NCBI databases using Biopython Bio.Entrez (ESearch, EInfo, EGQuery, ESpell). Use when finding records by keyword, building reproducible field-qualified queries, navigating the Entrez Query Translator, exploiting the history server for large result sets, handling retmax caps, or interpreting weekly index lag. Covers PubMed, Nucleotide, Protein, Gene, SRA, GEO, Assembly, Taxonomy, ClinVar, dbSNP.

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Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. Identify immunogenic regions in antigens. Use when designing vaccines, mapping antibody binding sites, or predicting immunogenic peptides.

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Predict protein-coding genes in eukaryotic genomes using BRAKER3 for combined RNA-seq and protein evidence, or GALBA for protein-only evidence. Runs Augustus with trained parameters for accurate gene models. Use when annotating a newly assembled eukaryotic genome or improving existing gene predictions.

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All-in-one read preprocessing with fastp including adapter trimming, quality filtering, deduplication, base correction, and HTML report generation. Use when preprocessing Illumina data and wanting a single fast tool instead of separate Cutadapt, Trimmomatic, and FastQC steps.

日本語の概要は準備中です。原文の説明を表示しています。