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概要と使いどころ
Diffusion-based docking that predicts protein-ligand poses without a predefined site. Use for blind docking, when traditional docking fails, or exploring multiple binding modes. Pipeline: prep protein (PDB) and ligand (SMILES/SDF), run inference, analyze confidence-ranked poses.
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smina molecular docking CLI. AutoDock Vina fork with customizable scoring functions, native SDF/MOL2/PDB ligand input, autoboxing, local energy minimization, and per-atom score breakdowns. Pipeline: receptor PDBQT prep -> ligand prep (RDKit/OpenBabel) -> dock via autobox or explicit grid -> rescore/minimize with custom scoring -> rank poses by affinity. Choose smina over Vina when you need custom scoring terms (--custom_scoring), local optimization of an existing pose (--local_only), per-atom contributions (--atom_term_data), or SDF/MOL2 ligands without manual PDBQT conversion. For unknown binding sites use diffdock; for the Python-bindings/Vinardo workflow use autodock-vina-docking.
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Poisson-model peak caller for ChIP-seq/ATAC-seq BAMs. MACS3 callpeak finds enriched regions (TF sites or histone marks) vs input/IgG; outputs BED narrowPeak/broadPeak for motif analysis, annotation, and differential binding. Use narrow peaks for TF ChIP-seq and ATAC-seq; broad for H3K27me3, H3K9me3, and other broad marks.
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omics-plotting: publication-style figure authoring for omics / bioinformatics results with matplotlib / seaborn. Read this before writing any plotting or figure code in any omics analysis — RNA-seq, proteomics, single-cell, variant, or database results — not only when a plot is explicitly requested: whenever an analysis will produce a figure, load this first and follow its recipes. Covers volcano, MA, expression / correlation heatmap, GSEA bar / dot plot, box / violin / bar / ridgeline, PCA / UMAP / t-SNE scatter, Kaplan–Meier, Manhattan / QQ / forest. Supplies a shared journal-ready style and copy-paste recipes so every figure looks like one consistent system. To combine several plots into ONE multi-panel composite figure, use the sibling `multipanel` skill.
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Query InterPro REST API for protein domain architecture, family classification, and member-DB integration. Search entries, retrieve a protein's domains, list family members, get taxonomic distribution, link to PDB. Unifies Pfam, PANTHER, PIRSF, PRINTS, PROSITE, SMART, CDD, NCBIfam. Use uniprot-protein-database for sequences; pdb-database for 3D structures.
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把一句话需求转成可复现、可验收视频工程的乔木智能剪辑导演。Use when the user asks to create, plan, edit, remix, explain, narrate, subtitle, animate, composite, or render a video—including one-line requests such as “制作一个科普视频：介绍 LLM 中的 RL”. Builds English-learning movie mixes, person profiles, explainers, code-drawn motion graphics (UI morph loops, showreels, kinetic-type promos, line-art/pixel/Three.js animation, lyric MVs), product launch videos, cinematic shorts, social clips, course/PPT videos, AI image/video/TTS/music-assisted stories, stock-footage stories, or multi-source montage. Routes across 33台词, ClipSeek/open media, local files, ListenHub, image generation, HTML/SVG/Canvas motion graphics with beat-grid storyboards and determinism probes, Manim, ffmpeg-full, captions, sound design, frame-0 video covers with YouTube thumbnails, and release checks.
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Log in to a test store on an iOS simulator. Use live-store DEBUG login by default, WireMock when mocks are requested, and the specified store for "my site".
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Canonical rules for writing and reviewing Rust code in Shift's crates. Use whenever you add or change `.rs` code, especially error handling (`ok_or`, `ok_or_else`, `map_err`, `?`, `CoreError`, `StoreError`, `SlugError`, `BridgeError`), entity lookups by id, checked arithmetic and integer conversions, or helpers that several call sites repeat. Load `rustdoc` as well when the change adds or edits doc comments.
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Use existing source code as the specification when the user can't describe what they want in words. Use when the user points at a library, module, folder, or site and says "like this," even if it's in a different language or stack.
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Digital safety inspection checklists for construction sites. Generate, conduct, and track safety inspections with automated reporting and compliance monitoring.
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Extract data from construction images using AI Vision. Analyze site photos, scanned documents, drawings.
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Digital safety inspection system for construction sites. Checklists, hazard tracking, incident reporting, and compliance documentation.
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Track material orders, deliveries, and inventory on construction sites. Monitor lead times, delivery status, and stock levels.
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Analyze construction site photos to track progress, detect safety issues, and compare against BIM models using computer vision.
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Track material deliveries, manage inventory, and coordinate logistics. Monitor delivery schedules and site storage.
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Analyze labor productivity from site data. Compare planned vs actual, identify trends, benchmark against industry standards.
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Automated safety compliance verification for construction sites. Check PPE usage, zone access, working at heights regulations, and generate compliance reports using rule-based and ML approaches.
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Optimize prefabrication and modular construction workflows. Plan module sequencing, factory scheduling, transportation logistics, and on-site assembly for maximum efficiency.
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IoT-based material tracking for construction sites. Monitor material delivery, storage conditions, usage, and inventory with sensors, RFID, GPS, and real-time dashboards.
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Aggregate and analyze IoT sensor data from construction sites. Collect data from multiple sensor types, detect anomalies, and trigger alerts for safety and quality monitoring.
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Generate automated daily progress reports from site data. Track work completed, labor hours, equipment usage, and weather conditions.
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Monitor construction progress using computer vision. Analyze site photos and drone imagery to track work completion, detect safety issues, and compare against BIM models.
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Monitor environmental conditions on construction sites. Track air quality, noise levels, vibration, dust, and weather to ensure compliance and worker safety.
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Search multiple free stock photo sites simultaneously. Filter by license type, orientation, and color scheme.
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