「ax」の検索結果

Decision rubric for promoting a prose prompt into a typed DSPy Signature. This is an ENHANCE overlay on top of the [[dspy]] library skill: it does NOT teach DSPy syntax — it answers the coder-agent decision "when do I stop hand-writing a prompt string and declare it as a `dspy.Signature`, and how do I name/describe its fields so the optimizer and the calling code both get a clean contract." Activate when: a prompt string grows past ~50 lines; the LM output is consumed by code (parsed, branched on, stored) rather than read by a human; the same prompt is reused across >1 call site; or a teammate asks "should this be a Signature?". Do NOT activate for one-shot throwaway prompts, or for HOW-TO questions about DSPy modules /optimizers/compile — defer those to the [[dspy]] skill and the [[agentsop-dspy]] workflow skill. Search keywords: typed prompt, structured prompt, DSPy Signature, prompt as a function, prompt contract, when to formalize a prompt.

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Project-kickoff rubric for the self-host vs managed-cloud decision — when is running your own inference engine / LLM platform worth the ops cost vs paying per-token for a managed API? Decide on two axes — VOLUME (a cost-crossover slider) and COMPLIANCE (a hard gate). Use at kickoff when choosing where to run inference, or when cost / data-residency pressure forces a re-evaluation.

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Learn from public breach disclosures — extract the audit question each one implies and check your own stack. Capital One IMDS abuse, LastPass vault exfiltration, Okta Lapsus$, Snowflake credential reuse, MOVEit, SolarWinds, Equifax, Target POS, Codecov, Uber, Twilio — what would you check now if your boss said 'could that happen to us?' Use when the user mentions 'breach analysis,' 'lessons learned,' 'security postmortem,' 'breach patterns,' 'breach lessons,' 'has this happened to us,' 'apply breach lessons,' 'preempt breaches,' 'security retrospective,' 'real-world security incidents,' or wants to harden against known attacker playbooks.

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Generate scroll-stopping viral hook video prompts for Seedance 2.0 on Higgsfield. Use whenever the user wants viral content, TikTok hooks, Instagram Reels openers, YouTube Shorts, attention-grabbing video, scroll-stopper, pattern interrupt, or any short-form video designed to maximize retention and views. Triggers on any mention of viral, hook, scroll-stop, retention, views, engagement, short-form, TikTok, Reels, Shorts.

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Master advanced prompt engineering techniques to maximize LLM performance, reliability, and controllability in production. Use when optimizing prompts, improving LLM outputs, or designing production prompt templates.

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This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.

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Choose optimal external AI models for code analysis, bug investigation, and architectural decisions. Use when consulting multiple LLMs via claudish, comparing model perspectives, or investigating complex Go/LSP/transpiler issues. Provides empirically validated model rankings (91/100 for MiniMax M2, 83/100 for Grok Code Fast) and proven consultation strategies based on real-world testing.

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Execute Codex CLI for code analysis, refactoring, and automated code changes. Use when you need to delegate complex code tasks to Codex AI with file references (@syntax) and structured output.

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Audit, redesign, generate, and improve IEEE manuscript figures, tables, captions, result presentation, plotting scripts, visual polish, hybrid Python/R plus vector-editor workflows, publication-ready matplotlib house style, and layout using routed visual-evidence checks. Use when checking or creating plot readability, axes, legends, line overlap, table structure, metric reporting, captions, grayscale accessibility, IEEE one-column/two-column layout, figure/table placement, claim-evidence mapping, reviewer first-impression risks, matplotlib/seaborn or ggplot2 figure code, SVG/PDF/TIFF/PNG export, Illustrator/Inkscape/PowerPoint/Figma finishing plans, or IEEE-style engineering evidence graphics.

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Use when working with the Resend email API — sending transactional emails (single or batch), receiving inbound emails via webhooks, managing email templates, tracking delivery events, managing domains, contacts, broadcasts, webhooks, API keys, automations, events, viewing API request logs, or setting up the Resend SDK. Always use this skill when the user mentions Resend, even for simple tasks like "send an email with Resend" — the skill contains critical gotchas (idempotency keys, webhook verification, template variable syntax) that prevent common production issues.

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Master advanced prompt engineering techniques to maximize LLM performance, reliability, and controllability in production. Use when optimizing prompts, improving LLM outputs, or designing production prompt templates.

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Use when writing Playwright tests, fixing flaky tests, debugging failures, implementing Page Object Model, configuring CI/CD, optimizing performance, mocking APIs, handling authentication or OAuth, testing accessibility (axe-core), file uploads/downloads, date/time mocking, WebSockets, geolocation, permissions, multi-tab/popup flows, mobile/responsive layouts, touch gestures, GraphQL, error handling, offline mode, multi-user collaboration, third-party services (payments, email verification), console error monitoring, global setup/teardown, test annotations (skip, fixme, slow), test tags (@smoke, @fast, @critical, filtering with --grep), project dependencies, security testing (XSS, CSRF, auth), performance budgets (Web Vitals, Lighthouse), iframes, component testing, canvas/WebGL, service workers/PWA, test coverage, i18n/localization, Electron apps, or browser extension testing. Covers E2E, component, API, visual, accessibility, security, Electron, and extension testing.

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Automatic quality control, linting, and static analysis procedures. Use after every code modification to ensure syntax correctness and project standards. Triggers onKeywords: lint, format, check, validate, types, static analysis.

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Review the changes since a fixed point (commit, branch, tag, or merge-base) along two axes: Standards (does the code follow this repo's documented coding standards?) and Spec (does the code match what the originating issue/spec asked for?). Runs both reviews in parallel sub-agents and reports them side by side. Use when the user wants to review a branch, a PR, work-in-progress changes, or asks to "review since X".

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Query EBI QuickGO REST API for GO terms and protein annotations. Fetch term metadata by ID, search by keyword, walk ancestor/descendant hierarchies, download annotations filtered by taxon, evidence code, aspect. Use for GO resolution, ontology traversal, annotation retrieval before enrichment. Use gseapy-gene-enrichment for enrichment; uniprot-protein-database for proteins.

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JASPAR 2024 TF binding profiles via REST API and pyJASPAR. Retrieve PFMs/PWMs by TF name, JASPAR ID, species, or structural class. Scan DNA for TFBS; browse by taxon (human, mouse) or TF family (bHLH, zinc finger). Use for motif enrichment input, TFBS scanning, and regulatory sequence analysis. For ChIP-seq peak motif discovery use homer-motif-analysis; for regulatory variant scoring use regulomedb-database.

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ENA REST API for sequences, reads, assemblies, and annotations. Portal API search, Browser API retrieval (XML/FASTA/EMBL), file reports for FASTQ/BAM URLs, taxonomy, cross-refs. For multi-DB Python use bioservices; for NCBI-only use pubmed-database or Biopython Entrez.

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NCBI Gene via E-utilities: curated records across 1M+ taxa. Official symbols, aliases, RefSeq IDs, summaries, coordinates, GO, interactions. Use for gene ID resolution and cross-species function queries. For sequences use Ensembl; for expression use geo-database.

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BRENDA Enzyme DB SOAP/REST queries: kinetic parameters (Km, Vmax, kcat, Ki), EC classes, substrate specificity, inhibitors, cofactors, organism data. 80K+ enzymes, 7M+ values. Free academic registration. For metabolic modeling use cobrapy-metabolic-modeling; metabolites use hmdb-database.

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NEB-IRC activation energy pipeline for reaction barriers using GFN2-xTB and pysisyphus. Optimize reactant and product geometries, run CI-NEB path search, optimize the transition state with a Hessian, verify with IRC (one imaginary mode, endpoints matching reactant/product, single NEB maximum), and report the electronic and Gibbs barriers. Use when you need a transition state, reaction barrier, activation energy, minimum energy path, or intrinsic reaction coordinate. Covers reactant/product atom-ordering pitfalls, feasibility sizing for single-core runs, and thermochemistry corrections. Renders an IRC energy-profile plot and an animated TS imaginary-mode HTML viewer. For 2D reaction scheme drawing use rdkit-chemdraw-cdxml.

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MATLAB/GNU Octave numerical computing: matrices, linear algebra, ODEs, signal processing, optimization, statistics, scientific visualization. MATLAB-syntax examples run on both. For Python use numpy/scipy; for statistical modeling use statsmodels.

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Unified Python framework for extracellular electrophysiology. Load 20+ formats (SpikeGLX, OpenEphys, NWB, Intan, Maxwell, Blackrock), preprocess, run 10+ sorters (Kilosort4, SpykingCircus2, Tridesclous, MountainSort5) via one API, compute quality metrics (SNR, ISI, firing rate), compare sorters, export NWB/Phy. For format-agnostic multi-sorter workflows. For Neuropixels-specific PSTH/decoding use neuropixels.

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Universal QA checklist for generated scientific plots: overlapping labels, clipped text, missing axes/legends, overcrowded data, and cross-journal resolution/format guidance.

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ETE Toolkit (ETE3): Python phylogenetic tree analysis and visualization. Parse Newick/NHX/PhyloXML, traverse/annotate nodes, render figures with TreeStyle/NodeStyle, integrate NCBI taxonomy, run PhyloTree comparative genomics. Use for species trees, gene family evolution, annotated tree figures.

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