「code analysis」の検索結果

Four-stage alchemical code transmutation — nigredo (decomposition), albedo (purification), citrinitas (illumination), rubedo (synthesis) — with meditate and heal checkpoints between stages. Transforms tangled or legacy code into optimized, well-structured output through systematic material analysis. Use when transforming legacy code into modern equivalents, refactoring deeply tangled modules where incremental fixes keep failing, converting a codebase between paradigms, or when simpler refactoring approaches have stalled and a full-cycle transformation is needed.

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Package entire code repositories into single AI-friendly files using Repomix. Capabilities include pack codebases with customizable include/exclude patterns, generate multiple output formats (XML, Markdown, plain text), preserve file structure and context, optimize for AI consumption with token counting, filter by file types and directories, add custom headers and summaries. Use when packaging codebases for AI analysis, creating repository snapshots for LLM context, analyzing third-party libraries, preparing for security audits, generating documentation context, or evaluating unfamiliar codebases.

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Delegate coding tasks to Codex AI for implementation, analysis, and alternative solutions. Use when you need a second AI perspective, want to explore different approaches, or need specialized Codex capabilities for complex coding tasks.

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Code obfuscation analysis and deobfuscation playbook. Use when reversing binaries protected by junk code, opaque predicates, self-modifying code, control flow flattening, VM protection, or string encryption.

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Classical cipher analysis playbook. Use when encountering substitution ciphers, Vigenere, transposition, XOR, or encoded text in CTF challenges that requires frequency analysis, Kasiski examination, or known-plaintext cryptanalysis.

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White-box source code security review structured around OWASP ASVS 5.0 (427 verification requirements across 16 chapters). Reads and understands application source code to build a security-aware knowledge base that enriches all downstream skills. Covers: tech stack identification, route/endpoint mapping, authentication and authorization architecture, dangerous function patterns, source-to-sink data flow tracing, IaC review, dependency analysis, ASVS compliance mapping, and LLM integration security (prompt injection, tool abuse, output handling, RAG poisoning, MCP server patterns). When LLM/AI framework usage is detected, automatically reviews OWASP LLM Top 10 patterns from source code and chains into /ai-redteam with white-box context for live endpoint testing. Chains into /pentester, /threat-modeling, /web-exploit, /api-security, /cloud-security, /analyze-cve, /credential-audit, and /ai-redteam — providing white-box context that transforms black-box testing into targeted, informed assessment.

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Execute ENCODE ChIP-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Use when users need to process ChIP-seq data following ENCODE standards, run peak calling with MACS2, perform IDR analysis, or generate signal tracks. Trigger on: ChIP-seq pipeline, run ChIP-seq, process ChIP-seq, MACS2 peak calling, IDR analysis, ChIP-seq FASTQ processing.

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Conduct rigorous cross-study meta-analysis of scRNA-seq data from ENCODE, integrating multiple single-cell transcriptomic datasets for a tissue/cell type. Use when the user wants to answer "what cell types exist in my tissue and what genes define them?" by combining scRNA-seq data across donors, labs, and platforms. Follows the Mawla et al. 2019 framework for assessing cross-study reproducibility, TIN-based quality filtering, and detection-limit-aware interpretation. Handles batch correction (Harmony/Seurat), dropout awareness, cross-contamination artifacts, and platform-specific biases. Use this skill for ANY scRNA-seq integration task, cross-dataset comparison, cell atlas construction, or reproducibility assessment involving ENCODE single-cell data.

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Guide for de novo and known motif enrichment analysis of ENCODE ChIP-seq and ATAC-seq peaks using HOMER and MEME Suite. Use when users need to discover TF binding motifs in peaks, validate ChIP-seq targets, or find co-binding partners. Trigger on: motif analysis, HOMER, MEME, de novo motif, motif enrichment, findMotifsGenome, AME, MEME-ChIP, known motif, TF binding motif, co-factor, motif discovery.

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Guide for multi-experiment batch operations: QC screening, batch download, comparison, and report generation across many ENCODE experiments simultaneously. Use when users need to process 5+ experiments together, create experiment comparison tables, perform batch quality checks, or generate summary reports. Trigger on: batch analysis, multiple experiments, bulk processing, experiment comparison, batch QC, multi-sample, batch download, experiment table, summary report, collection analysis.

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Generate publication-ready methods sections, figure legends, supplementary tables, and data availability statements from ENCODE analysis provenance. Implements the scientific documentation standards requiring complete metadata reporting. Use when the user needs to write methods, generate figure legends, create supplementary tables, draft data availability statements, compile tool citations, or auto-generate any publication text from their ENCODE analysis. Trigger on: methods section, figure legend, supplementary table, data availability, tool citations, publication writing, manuscript, write methods, methods draft, write up, write-up, paper writing, reproducible methods.

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Analyze any GitHub repository in AI-friendly format. Convert entire repos to single markdown documents, generate architecture diagrams with Mermaid, inspect structure trees, language breakdowns, and recent activity. Includes GitHub URL tricks, API shortcuts, and advanced search techniques. Read-only analysis — never executes code from repositories. Built for AI agents — Python stdlib only, no dependencies. Use for repository analysis, code architecture review, open source research, GitHub intelligence, repo documentation, and codebase understanding.

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Perform comprehensive technical reviews of Ruby on Rails applications. Runs automated analysis tools (RubyCritic, Brakeman, bundler-audit, Gitleaks, Debride, linters, SimpleCov, Rails stats, Rails ERD), analyzes code for architecture, security, authorization (Pundit/CanCanCan), dead code, and design issues, and produces a structured markdown report with prioritized findings and a 0-10 score. Use when the user requests a tech review, code audit, project assessment, or quality analysis of a Rails application.

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Multi-pass structural code review with adversarial analysis, scope-aware dispatch, adversarial persona passes, and forced-finding protocol. Supports input modes: branch diff (default), PR number (#123), commit hash, pending changes (--pending). Use when asked to "review this PR", "code review", "pre-landing review", "check my diff", or "review #123". Proactively suggest when the user is about to merge or land code changes. NOT for behavioral verification against a running build (see mk:evaluate); NOT for post-implementation simplification (see mk:simplify).

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Analyze data from randomized controlled trials. Use when user mentions: treatment effects, ITT analysis, LATE, TOT, compliance analysis, attrition, balance checks, heterogeneous effects, RCT results, experimental analysis.

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Detect and prevent QR code phishing (quishing) attacks that bypass traditional email security by embedding malicious URLs in QR code images within emails.

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Systematically deobfuscate multi-layer PowerShell malware using AST analysis, dynamic tracing, and tools like PSDecode and PowerDecode to reveal hidden payloads and C2 infrastructure.

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Document requirements analysis: Analyzes concept and requirements documents in the docs/ folder, checks requirements against current code, and creates a consolidated difference report.

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Master binary analysis patterns including disassembly, decompilation, control flow analysis, and code pattern recognition. Use when analyzing executables, understanding compiled code, or performing...

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Use when working with Codecov — codecov coverage tracking management. Covers coverage reporting, PR comments, flag management, component analysis, and coverage trend tracking. Use when managing Codecov configuration, analyzing coverage reports, debugging coverage uploads, or configuring coverage thresholds.

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Use when working with Deepsource — deepSource code analysis management. Covers automated code reviews, issue detection, antipattern analysis, coverage tracking, and analyzer configuration. Use when managing DeepSource projects, reviewing detected issues, configuring analyzers, or tracking code health metrics.

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Use when working with Codacy — codacy code quality management. Covers automated code reviews, pattern configuration, coverage tracking, security analysis, and repository settings. Use when managing Codacy projects, reviewing code patterns, configuring quality gates, or tracking code quality trends.

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Orchestrate Xcode build optimization by benchmarking first, running the specialist analysis skills, prioritizing findings, requesting explicit approval, delegating approved fixes to xcode-build-fixer, and re-benchmarking after changes. Use when a developer wants an end-to-end build optimization workflow, asks to speed up Xcode builds, wants a full build audit, or needs a recommend-first optimization pass covering compilation, project settings, and packages.

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Configure GitHub Advanced Security with CodeQL to perform automated static analysis and vulnerability Tespit across repositories at enterprise scale.

日本語の概要は準備中です。原文の説明を表示しています。