「trees」の検索結果

Methods to infer clonal tree configuration for a population of cells using single-cell RNA-seq data (scRNA-seq), and possibly other data modalities. Methods are also provided to assign cells to inferred clones and explore differences in gene expression between clones. These methods can flexibly integrate information from imperfect clonal trees inferred based on bulk exome-seq data, and sparse variant alleles expressed in scRNA-seq data. A flexible beta-binomial error model that accounts for stoc

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'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.

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Interpret app metrics and make data-driven decisions. Covers DAU/MAU, retention, LTV, ARPU, App Store Connect analytics, AARRR funnel analysis, cohort analysis, and diagnostic decision trees. Use when user wants to understand their metrics, diagnose problems, or build a data-driven growth plan.

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Use when syncing real-time data, structuring JSON trees, reading/writing, creating listeners, enabling offline persistence, managing presence, sharding, or writing security rules.

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This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate decision trees, or get help choosing what scientific problem to work on. Typical requests include "I have an idea for a project", "I'm stuck on my research", "help me evaluate this project", "what should I work on", or "I need strategic advice about my research".

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Opportunity Solution Trees, opportunity scoring, Lean Canvas, JTBD job mapping, and technique selection guide

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Phase execution skill for licensed Atlas Fleet runs. Use when HANDOFF has selected Atlas Fleet and the project should be executed across isolated launcher worktrees with inbox-based result collection, verified CDD cards, sequential integration merges, and one final PR.

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Collect auditable Reddit search results and full comment trees at scale, preserve the source JSON, and normalize posts and comments into analysis-ready JSONL. Use for VOC, market research, community discovery, keyword snowballing, or any task that needs Reddit post and comment text without inventing unavailable fields. Reddit data layer of the bggg VOC suite (shared project folder; orchestrated by industry-orchestrator, reported by bggg-voc-report).

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Use when a finished GSD workspace and its worktrees should be deleted. Confirms first, runs git worktree remove for each member repo, and refuses if any repo has uncommitted changes.

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Use when you need an isolated copy of one or more repos with its own .planning/, or want to work on several repos in parallel. Creates worktrees or clones plus WORKSPACE.md; then run /gsd-new-project inside.

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Compose modern Flutter layouts and widgets idiomatically. Use for widget trees, layout constraints, mounted safety, and UI composition—not BLoC state management, routing, dependency injection, or tests.

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Reverse-engineer and clone a website in one shot — extracts assets, CSS, and content section-by-section and proactively dispatches parallel builder agents in worktrees as it goes. Use this whenever the user wants to clone, replicate, rebuild, reverse-engineer, or copy any website. Also triggers on phrases like "make a copy of this site", "rebuild this page", "pixel-perfect clone". Provide the target URL as an argument.

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Steam-style achievement system with XP, levels, streaks, and skill trees. Gamifies the development workflow. 25 achievements across 5 categories.

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Builds form components and data collection interfaces including contact forms, registration flows, checkout processes, surveys, and settings pages. Includes 50+ input types, validation strategies, accessibility patterns (WCAG 2.1), multi-step wizards, and UX best practices. Provides decision trees from data type to component selection, validation timing guidance, and error handling patterns. Use when creating forms, collecting user input, building surveys, implementing validation, designing multi-step workflows, or ensuring form accessibility.

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Create branded architecture, architecture delta, IT current-state, flowchart, sequence, state machine, ER/data model, timeline, swimlane, quadrant, radar/spider, polar chart (polar/radial lollipop), loop/flywheel, nested, tree, org chart, layer stack, exploded axonometric, axonometric plan, Venn, pyramid/funnel, treemap and marimekko, heatmap, bar and dumbbell, waterfall, line (slopegraph, ridgeline, streamgraph, bump), Gantt and scatter charts (bubble, beeswarm), high-level, process, medallion, data flow, DP integration, DP security matrix, Sankey, fishbone, Wardley map, kanban, user journey, deployment, dependency graph, UML class, story map, or database schema diagrams as HTML/SVG/PNG, with .drawio, Mermaid, and .excalidraw import, plus lifecycle phase maps, block decomposition trees, and onboarding guidance.

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Use `graphify-dotnet` to generate codebase knowledge graphs, architecture snapshots, and exportable repository maps from .NET or polyglot source trees, with optional AI-enriched semantic relationships. USE FOR: graphify commands; graph JSON, HTML, SVG, Cypher, Markdown, and Obsidian exports; repository map and architecture snapshot generation. DO NOT USE FOR: unrelated stacks; generic tasks that do not need this specific guidance. INVOKES: inspect the repository context, edit targeted files, and run relevant build, test, lint, or validation commands when changes are made.

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Use Chous in .NET repositories that ship sizeable frontend codebases and want file-structure linting, naming convention enforcement, and folder-layout policy as a CLI gate. USE FOR: growing frontend trees; naming, folder, or file-placement policy; CI checks for frontend layout drift. DO NOT USE FOR: semantic code bugs, type errors, or framework API misuse; CSS, HTML, or JS rule enforcement inside files. INVOKES: inspect the repository context, edit targeted files, and run relevant build, test, lint, or validation commands when changes are made.

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Investigate customer-impacting OpenAI Ruby SDK defects and privately handled security risks, then dispatch at most five evidenced, independent fixes to isolated project worktrees.

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Dependency management specialist. Use when updating dependencies, scanning for vulnerabilities, analyzing dependency trees, or ensuring license compliance. Handles npm, pip, maven, and other package managers.

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Spawns multiple AI coding agents to work on related GitHub issues concurrently using git worktrees. Use when breaking down a large feature into multiple issues, running parallel agents with --print flag, or managing wave-based execution of related tasks.

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Run a structured threat-modeling session for a new feature, system, or architecture — STRIDE, attack trees, data flow diagrams, abuse cases. Use when the user mentions 'threat model,' 'threat modeling,' 'STRIDE,' 'attack tree,' 'abuse case,' 'data flow diagram,' 'DFD,' 'security architecture review,' 'security review,' 'design review,' 'pre-implementation security,' 'shift left,' 'what could go wrong,' or needs strategic security thinking before code is written.

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Selects the correct CLAUDE.md or LESSONS.md template via decision trees. Use when starting a project or unsure which fits.

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[STUB] Options pricing models including Black-Scholes, binomial trees, Monte Carlo, implied volatility surfaces, and Greeks for crypto options

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Master advanced Git workflows including rebasing, cherry-picking, bisect, worktrees, and reflog to maintain clean history and recover from any situation. Use when managing complex Git histories, collaborating on feature branches, or troubleshooting repository issues.

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