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cogeqc aims to facilitate systematic quality checks on standard comparative genomics analyses to help researchers detect issues and select the most suitable parameters for each data set. cogeqc can be used to asses: i. genome assembly and annotation quality with BUSCOs and comparisons of statistics with publicly available genomes on the NCBI; ii. orthogroup inference using a protein domain-based approach and; iii. synteny detection using synteny network properties. There are also data visualizat

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Universal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover letters, invoices, academic papers, theses/dissertations, academic CVs, presentations (Beamer), scientific posters, formal letters, exams/quizzes, books, cheat sheets, reference cards, exam formula sheets, fillable PDF forms (hyperref form fields), conditional content (etoolbox toggles), mail merge from CSV/JSON (Jinja2 templates), version diffing (latexdiff), charts (pgfplots + matplotlib), tables (booktabs + CSV import), images (TikZ), Mermaid diagrams, AI-generated images, watermarks, landscape pages, bibliography/citations (BibTeX/biblatex), multi-language/CJK (auto XeLaTeX), algorithms/pseudocode, colored boxes (tcolorbox), SI units (siunitx), Pandoc format conversion (Markdown/DOCX/HTML ↔ LaTeX), and PDF-to-LaTeX conversion of handwritten or printed documents (math, business, legal, general). Compile script supports pdflatex, xelatex, lualatex with auto-detection, latexmk backend, texfot log filtering, PDF/A output, and verbosity control (--verbose/--quiet). Empirically optimized scaling: single agent 1-10 pages, split 11-20, batch-7 pipeline 21+. Use when user asks to: (1) create a resume/CV/cover letter, (2) write a LaTeX document, (3) create PDF with tables/charts/images, (4) compile a .tex file, (5) make a report/invoice/presentation, (6) anything involving LaTeX or pdflatex, (7) convert/OCR a PDF to LaTeX, (8) convert handwritten notes, (9) create charts/graphs/diagrams, (10) create slides, (11) write a thesis or dissertation, (12) create an academic CV, (13) create a poster, (14) create an exam/quiz, (15) create a book, (16) convert between document formats (Markdown, DOCX, HTML to/from LaTeX), (17) generate Mermaid diagrams for LaTeX, (18) create a formal business letter, (19) create a cheat sheet or reference card, (20) create an exam formula sheet or crib sheet, (21) condense lecture notes/PDFs into a cheat sheet, (22) create a fillable PDF form with text fields/checkboxes/dropdowns, (23) create a document with conditional content/toggles (show/hide sections), (24) generate batch/mail-merge documents from CSV/JSON data, (25) create a version diff PDF (latexdiff) highlighting changes between documents, (26) create a homework or assignment submission with problems and solutions, (27) create a lab report with data tables, graphs, and error analysis, (28) encrypt or password-protect a PDF, (29) merge multiple PDFs into one, (30) optimize/compress a PDF for web or email, (31) lint or check a LaTeX document for common issues, (32) count words in a LaTeX document, (33) analyze document statistics (figures, tables, citations), (34) fetch BibTeX from a DOI, (35) convert a Graphviz .dot file to PDF/PNG, (36) convert a PlantUML .puml file to PDF/PNG, (37) create a one-pager/fact sheet/executive summary, (38) create a datasheet or product specification sheet, (39) extract pages from a PDF (page ranges, odd/even), (40) check LaTeX package availability before compiling, (41) analyze citations and cross-reference with .bib files, (42) debug LaTeX compilation errors, (43) make a document accessible (PDF/A, tagged PDF), (44) create lecture notes or course handouts, (45) fill an existing PDF form (fillable fields or non-fillable with annotations), (46) extract text or tables from a PDF (pdfplumber, pypdf), (47) OCR a scanned PDF to text (pytesseract), (48) create a PDF programmatically with reportlab (Canvas, Platypus), (49) rotate or crop PDF pages (pypdf), (50) add a watermark to an existing PDF, (51) extract metadata from a PDF (title, author, subject).

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Expert knowledge for Azure Large Instances development including troubleshooting, limits & quotas, and integrations & coding patterns. Use when configuring Epic SKUs, sizing volume groups, tuning EHR storage, or resolving Epic–ALI connectivity/perf issues, and other Azure Large Instances related development tasks. Not for Azure Baremetal Infrastructure (use azure-baremetal-infrastructure), Azure Virtual Machines (use azure-virtual-machines), Azure Virtual Machine Scale Sets (use azure-vm-scalesets), Azure HPC Cache (use azure-hpc-cache).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Operator Nexus development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, and deployment. Use when configuring Nexus fabric ACLs/BGP, securing RBAC/SSH, planning cluster placement, or diagnosing fabric/K8s issues, and other Azure Operator Nexus related development tasks. Not for Azure Operator Insights (use azure-operator-insights), Azure Operator Service Manager (use azure-operator-service-manager), Azure Networking (use azure-networking), Azure Virtual Network (use azure-virtual-network).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Oracle development including troubleshooting, security, and integrations & coding patterns. Use when configuring Oracle TDE with Azure Key Vault, fixing Oracle@Azure issues, or exporting Exadata logs to Azure Monitor/Sentinel, and other Azure Oracle related development tasks. Not for Azure SQL Database (use azure-sql-database), Azure SQL Managed Instance (use azure-sql-managed-instance), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines), SAP HANA on Azure Large Instances (use azure-sap).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Playwright Workspaces development including troubleshooting, best practices, decision making, limits & quotas, security, and configuration. Use when managing Playwright Testing workspaces, tokens/RBAC, quotas, monitoring/metrics, or run/AADSTS7000112 issues, and other Playwright Workspaces related development tasks. Not for Azure App Testing (use azure-app-testing), Azure DevOps (use azure-devops), Azure Pipelines (use azure-pipelines), Azure Test Plans (use azure-test-plans).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Internet Peering development including troubleshooting. Use when validating Peering Service prefixes, checking prefix registration, verifying routing, or fixing reachability issues, and other Azure Internet Peering related development tasks. Not for Azure ExpressRoute (use azure-expressroute), Azure Virtual Network (use azure-virtual-network), Azure Virtual WAN (use azure-virtual-wan), Azure VPN Gateway (use azure-vpn-gateway).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Education Hub development including troubleshooting, and limits & quotas. Use when managing Azure for Students credits, yearly quotas, renewals, or Dev Tools for Teaching sign-in issues, and other Azure Education Hub related development tasks. Not for Azure Lab Services (use azure-lab-services), Azure DevTest Labs (use azure-devtest-labs), Azure Virtual Desktop (use azure-virtual-desktop).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Data Science Virtual Machines development including troubleshooting, decision making, architecture & design patterns, security, configuration, integrations & coding patterns, and deployment. Use when managing DSVM images/tools, IaC deployment (Bicep/ARM), Key Vault secrets, MLflow, or GPU/Jupyter issues, and other Azure Data Science Virtual Machines related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure Machine Learning (use azure-machine-learning), Azure Databricks (use azure-databricks), Azure HDInsight (use azure-hdinsight).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Cloud Hsm development including troubleshooting, best practices, limits & quotas, security, and integrations & coding patterns. Use when configuring Cloud HSM auth/networking, PKCS#11 apps, X.509 cert storage, capacity limits, or cluster issues, and other Azure Cloud Hsm related development tasks. Not for Azure Dedicated HSM (use azure-dedicated-hsm), Azure Payment Hsm (use azure-payment-hsm), Azure Key Vault (use azure-key-vault), Azure Attestation (use azure-attestation).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Analysis Services development including troubleshooting. Use when resolving server connectivity, firewall/VNet, DNS, client connection, or network error issues, and other Azure Analysis Services related development tasks. Not for Azure Synapse Analytics (use azure-synapse-analytics), Azure SQL Database (use azure-sql-database), Azure SQL Managed Instance (use azure-sql-managed-instance), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines).

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for Azure Carbon Optimization development including troubleshooting, security, and integrations & coding patterns. Use when using Carbon Service REST API, Python exports, RBAC roles, emissions data quality, or dashboard issues, and other Azure Carbon Optimization related development tasks. Not for Azure Cost Management (use azure-cost-management), Azure Impact Reporting (use azure-impact-reporting), Azure Monitor (use azure-monitor), Azure Policy (use azure-policy).

日本語の概要は準備中です。原文の説明を表示しています。

Continuous security vulnerability scanning for OWASP Top 10, common vulnerabilities, and insecure patterns. Use when reviewing code, before deployments, or on file changes. Scans for SQL injection, XSS, secrets exposure, auth issues. Triggers on file changes, security mentions, deployment prep.

日本語の概要は準備中です。原文の説明を表示しています。

产出给人读的 HTML 长文——把已有的素材、经历、资料想清楚再写出来。每次触发先用 AskUserQuestion 一次性问清「给谁看 / 读完拿什么 / 多长 / 风格 + 侧重」4 个关键参数，再按 6 阶段框架输出。**产出只有 HTML 一种格式**——用户要 markdown 或要在聊天里直接说，就不该用本 skill。当用户说"做个复盘""汇总一下""总结这堆""整理成 HTML""做个教程/学习指南""把 X 讲清楚"等需要超过 500 字的结构化阅读内容时触发。不适用于：项目的计划报告/框架计划/版本路线（用 issue-pool，它自带 md2html）、PRD/需求文档/测试用例（用 prd-test-writer）、整页界面方案（用 page-solution-design）、起名（用 product-naming）、写代码/修 bug/改文件、一两句话就能答完的问题。

日本語の概要は準備中です。原文の説明を表示しています。

把项目推送到 GitHub，三种模式自动判断：**首次推送**（大文件扫描 → 生成 .gitignore → git init → gh 建仓 → 推送）、**日常更新**（commit + push）、**版本发布**（打 tag + 建 Release，可附下载文件）。核心原则是安全第一：推之前必扫大文件和敏感文件，宁可多问一句也不把不该推的东西推上去。当用户说"推到GitHub""推送到GitHub""git push""上传到GitHub""提交并推送""发版本""打release""打tag""/git-push"时触发。不适用于：规划哪些功能进哪个版本号（用 issue-pool——本 skill 只负责把已经定好的版本号打成 tag）、复杂 git 操作如 rebase/cherry-pick/解冲突/改历史/回滚（直接用 git 命令，本 skill 不覆盖）、代码写完前的自测和验收。

日本語の概要は準備中です。原文の説明を表示しています。

Submit a deployed Uniswap v4 hook to the public univ4-hooks registry - format the listing, open a PR (issue fallback) so it lists on the hook marketplace.

日本語の概要は準備中です。原文の説明を表示しています。

Track tickets, issues, and progress for your project. Load project context, manage sessions, guide setup.

日本語の概要は準備中です。原文の説明を表示しています。

Groom a single GitHub issue — produce an implementation spec and optionally post the grooming summary as a GitHub comment. Standalone entry point for the grooming-agent.

日本語の概要は準備中です。原文の説明を表示しています。

Identify and neutralize buyer objections. Trigger on "why wouldn't someone buy", "objections", "hesitation", "conversion issues".

日本語の概要は準備中です。原文の説明を表示しています。

JPA/Hibernate patterns and common pitfalls (N+1, lazy loading, transactions, queries). Use when user has JPA performance issues, LazyInitializationException, or asks about entity relationships and fetching strategies.

日本語の概要は準備中です。原文の説明を表示しています。

Audit affiliate blog posts and landing pages for SEO issues. Triggers on: "audit my blog post for SEO", "check my SEO", "SEO review", "improve my rankings", "SEO checklist", "on-page SEO audit", "keyword optimization check", "why isn't my page ranking", "SEO score", "content quality audit", "check my meta tags", "internal linking audit", "quick SEO wins".

日本語の概要は準備中です。原文の説明を表示しています。

Performs comprehensive codebase analysis covering architecture, code quality, security, performance, testing, and maintainability. Use when user wants to audit code quality, identify technical debt, find security issues, assess test coverage, or get a codebase health check.

日本語の概要は準備中です。原文の説明を表示しています。

Use for authorized assessment of federated identity systems including SAML, OIDC, OAuth2 flows, SSO misconfiguration, and token confusion issues.

日本語の概要は準備中です。原文の説明を表示しています。

Use after a phase's code is written, or when the user asks to review changed files for bugs, security issues, or quality. Spawns the gsd-code-reviewer agent at quick, standard, or deep depth and writes the phase REVIEW.md.

日本語の概要は準備中です。原文の説明を表示しています。