1.3万 件 ・ 関連度順
概要と使いどころ
Implements miscellaneous functions for interpretation of single-cell RNA-seq data. Methods are provided for assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and
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Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).
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This package contain functions to run genomic instability analysis (GIA) from scRNA-Seq data. GIA estimates the association between gene expression and genomic location of the coding genes. It uses the aREA algorithm to quantify the enrichment of sets of contiguous genes (loci-blocks) on the gene expression profiles and estimates the Genomic Instability Score (GIS) for each analyzed cell.
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Methods to infer clonal tree configuration for a population of cells using single-cell RNA-seq data (scRNA-seq), and possibly other data modalities. Methods are also provided to assign cells to inferred clones and explore differences in gene expression between clones. These methods can flexibly integrate information from imperfect clonal trees inferred based on bulk exome-seq data, and sparse variant alleles expressed in scRNA-seq data. A flexible beta-binomial error model that accounts for stoc
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Universal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover letters, invoices, academic papers, theses/dissertations, academic CVs, presentations (Beamer), scientific posters, formal letters, exams/quizzes, books, cheat sheets, reference cards, exam formula sheets, fillable PDF forms (hyperref form fields), conditional content (etoolbox toggles), mail merge from CSV/JSON (Jinja2 templates), version diffing (latexdiff), charts (pgfplots + matplotlib), tables (booktabs + CSV import), images (TikZ), Mermaid diagrams, AI-generated images, watermarks, landscape pages, bibliography/citations (BibTeX/biblatex), multi-language/CJK (auto XeLaTeX), algorithms/pseudocode, colored boxes (tcolorbox), SI units (siunitx), Pandoc format conversion (Markdown/DOCX/HTML ↔ LaTeX), and PDF-to-LaTeX conversion of handwritten or printed documents (math, business, legal, general). Compile script supports pdflatex, xelatex, lualatex with auto-detection, latexmk backend, texfot log filtering, PDF/A output, and verbosity control (--verbose/--quiet). Empirically optimized scaling: single agent 1-10 pages, split 11-20, batch-7 pipeline 21+. Use when user asks to: (1) create a resume/CV/cover letter, (2) write a LaTeX document, (3) create PDF with tables/charts/images, (4) compile a .tex file, (5) make a report/invoice/presentation, (6) anything involving LaTeX or pdflatex, (7) convert/OCR a PDF to LaTeX, (8) convert handwritten notes, (9) create charts/graphs/diagrams, (10) create slides, (11) write a thesis or dissertation, (12) create an academic CV, (13) create a poster, (14) create an exam/quiz, (15) create a book, (16) convert between document formats (Markdown, DOCX, HTML to/from LaTeX), (17) generate Mermaid diagrams for LaTeX, (18) create a formal business letter, (19) create a cheat sheet or reference card, (20) create an exam formula sheet or crib sheet, (21) condense lecture notes/PDFs into a cheat sheet, (22) create a fillable PDF form with text fields/checkboxes/dropdowns, (23) create a document with conditional content/toggles (show/hide sections), (24) generate batch/mail-merge documents from CSV/JSON data, (25) create a version diff PDF (latexdiff) highlighting changes between documents, (26) create a homework or assignment submission with problems and solutions, (27) create a lab report with data tables, graphs, and error analysis, (28) encrypt or password-protect a PDF, (29) merge multiple PDFs into one, (30) optimize/compress a PDF for web or email, (31) lint or check a LaTeX document for common issues, (32) count words in a LaTeX document, (33) analyze document statistics (figures, tables, citations), (34) fetch BibTeX from a DOI, (35) convert a Graphviz .dot file to PDF/PNG, (36) convert a PlantUML .puml file to PDF/PNG, (37) create a one-pager/fact sheet/executive summary, (38) create a datasheet or product specification sheet, (39) extract pages from a PDF (page ranges, odd/even), (40) check LaTeX package availability before compiling, (41) analyze citations and cross-reference with .bib files, (42) debug LaTeX compilation errors, (43) make a document accessible (PDF/A, tagged PDF), (44) create lecture notes or course handouts, (45) fill an existing PDF form (fillable fields or non-fillable with annotations), (46) extract text or tables from a PDF (pdfplumber, pypdf), (47) OCR a scanned PDF to text (pytesseract), (48) create a PDF programmatically with reportlab (Canvas, Platypus), (49) rotate or crop PDF pages (pypdf), (50) add a watermark to an existing PDF, (51) extract metadata from a PDF (title, author, subject).
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Expert knowledge for Azure Virtual Desktop development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring host pools/FSLogix, autoscale, MSIX App Attach, Teams optimization, or AVD security/SSO, and other Azure Virtual Desktop related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure Dev Box (use azure-dev-box).
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Expert knowledge for Azure Site Recovery development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when planning ASR for VMware/Hyper-V, Azure-to-Azure DR, SAP/SQL apps, ADE/CMK encryption, or Terraform automation, and other Azure Site Recovery related development tasks. Not for Azure Backup (use azure-backup), Azure Virtual Machines (use azure-virtual-machines), Azure Virtual Network (use azure-virtual-network), Azure Virtual WAN (use azure-virtual-wan).
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Expert knowledge for Azure VMware Solution development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring AVS networking/storage, HCX migrations, Horizon/VDI, vSAN clusters, or Azure-integrated backups, and other Azure VMware Solution related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure Stack Edge (use azure-stack-edge), Azure Nutanix (use azure-nutanix), Azure Red Hat OpenShift (use azure-redhat-openshift).
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Expert knowledge for Azure Service Fabric development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when designing Service Fabric clusters, Reliable Services/Actors, reverse proxy/API gateways, CRP/CRM settings, or sfctl automation, and other Azure Service Fabric related development tasks. Not for Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Container Apps (use azure-container-apps), Azure App Service (use azure-app-service), Azure Virtual Machines (use azure-virtual-machines).
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Expert knowledge for Azure Repos development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, and integrations & coding patterns. Use when managing Git/TFVC repos, branch policies, PR checks/status, CodeQL/security scans, or Azure DevOps integrations, and other Azure Repos related development tasks. Not for Azure DevOps (use azure-devops), Azure Pipelines (use azure-pipelines), Azure Boards (use azure-boards), Azure Artifacts (use azure-artifacts).
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Expert knowledge for Azure Stack Edge development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when deploying IoT Edge modules, GPU/Kubernetes apps, DeepStream workloads, Arc GitOps, or local ARM integrations, and other Azure Stack Edge related development tasks. Not for Azure IoT Edge (use azure-iot-edge), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Kubernetes Service Edge Essentials (use azure-aks-edge-essentials), Azure Virtual Machines (use azure-virtual-machines).
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Expert knowledge for Azure Red Hat OpenShift development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when deploying ARO/HCP clusters, configuring networking/storage, securing with Entra/NSGs, or integrating ACR/Key Vault, and other Azure Red Hat OpenShift related development tasks. Not for Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Container Apps (use azure-container-apps), Azure Virtual Machines (use azure-virtual-machines).
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Expert knowledge for Azure SQL Managed Instance development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring MI networking, backups/restore, geo-replication/HA, Entra/Kerberos auth, or MI Link workloads, and other Azure SQL Managed Instance related development tasks. Not for Azure SQL Database (use azure-sql-database), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines), Azure Cosmos DB (use azure-cosmos-db).
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Expert knowledge for Azure Test Plans development including limits & quotas, security, configuration, and integrations & coding patterns. Use when configuring test failure types, custom fields, retention, permissions, or tcm.exe-based test suite automation, and other Azure Test Plans related development tasks. Not for Azure DevOps (use azure-devops), Azure Pipelines (use azure-pipelines), Azure Boards (use azure-boards), Azure App Testing (use azure-app-testing).
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Expert knowledge for Azure Virtual Machine Scale Sets development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring autoscale, standby pools, PPG-based layouts, disk encryption with Key Vault, or VMSS APIs/CLI, and other Azure Virtual Machine Scale Sets related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure App Service (use azure-app-service), Azure Service Fabric (use azure-service-fabric).
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Expert knowledge for Azure SQL Database development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when using Hyperscale, serverless tiers, Always Encrypted, geo-replication, or elastic pools, and other Azure SQL Database related development tasks. Not for Azure SQL Managed Instance (use azure-sql-managed-instance), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines), Azure Cosmos DB (use azure-cosmos-db), Azure Synapse Analytics (use azure-synapse-analytics).
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Expert knowledge for Playwright Workspaces development including troubleshooting, best practices, decision making, limits & quotas, security, and configuration. Use when managing Playwright Testing workspaces, tokens/RBAC, quotas, monitoring/metrics, or run/AADSTS7000112 issues, and other Playwright Workspaces related development tasks. Not for Azure App Testing (use azure-app-testing), Azure DevOps (use azure-devops), Azure Pipelines (use azure-pipelines), Azure Test Plans (use azure-test-plans).
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Expert knowledge for Azure Large Instances development including troubleshooting, limits & quotas, and integrations & coding patterns. Use when configuring Epic SKUs, sizing volume groups, tuning EHR storage, or resolving Epic–ALI connectivity/perf issues, and other Azure Large Instances related development tasks. Not for Azure Baremetal Infrastructure (use azure-baremetal-infrastructure), Azure Virtual Machines (use azure-virtual-machines), Azure Virtual Machine Scale Sets (use azure-vm-scalesets), Azure HPC Cache (use azure-hpc-cache).
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Expert knowledge for Azure Oracle development including troubleshooting, security, and integrations & coding patterns. Use when configuring Oracle TDE with Azure Key Vault, fixing Oracle@Azure issues, or exporting Exadata logs to Azure Monitor/Sentinel, and other Azure Oracle related development tasks. Not for Azure SQL Database (use azure-sql-database), Azure SQL Managed Instance (use azure-sql-managed-instance), SQL Server on Azure Virtual Machines (use azure-sql-virtual-machines), SAP HANA on Azure Large Instances (use azure-sap).
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Expert knowledge for Azure Nutanix development including decision making. Use when selecting NC2 on Azure regions, VM SKUs, and planning capacity, performance, availability, or cost, and other Azure Nutanix related development tasks. Not for Azure VMware Solution (use azure-vmware-solution), Azure Baremetal Infrastructure (use azure-baremetal-infrastructure), Azure Virtual Machines (use azure-virtual-machines), Azure Stack Edge (use azure-stack-edge).
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Expert knowledge for Azure Managed Lustre development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, and integrations & coding patterns. Use when mounting AML filesystems, linking Blob, using AKS CSI, setting quotas, or tuning Lustre performance, and other Azure Managed Lustre related development tasks. Not for Azure NetApp Files (use azure-netapp-files), Azure Virtual Machines (use azure-virtual-machines), Azure Virtual Network (use azure-virtual-network), Azure Virtual Network Manager (use azure-virtual-network-manager).
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Expert knowledge for Azure Data Box development including troubleshooting, best practices, limits & quotas, security, configuration, and integrations & coding patterns. Use when using Data Box/Disk/Heavy for offline data copy, SMB/NFS uploads, REST APIs, CMKs/Key Vault, or NTFS ACL preservation, and other Azure Data Box related development tasks. Not for Azure Import Export (use azure-import-export), Azure Stack Edge (use azure-stack-edge), Azure Virtual Machines (use azure-virtual-machines).
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Expert knowledge for Azure DevTest Labs development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when managing lab VM images, ARM/CI-CD automation, RBAC/Key Vault security, hub-spoke networking, or quotas, and other Azure DevTest Labs related development tasks. Not for Azure Lab Services (use azure-lab-services), Azure Dev Box (use azure-dev-box), Azure Virtual Machines (use azure-virtual-machines), Azure Virtual Desktop (use azure-virtual-desktop).
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Expert knowledge for Azure Files development including best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when planning Azure File shares, File Sync tiering, NFS/SMB migrations, DR topologies, or RAG integrations, and other Azure Files related development tasks. Not for Azure Blob Storage (use azure-blob-storage), Azure NetApp Files (use azure-netapp-files), Azure Managed Lustre (use azure-managed-lustre), Azure Virtual Machines (use azure-virtual-machines).
日本語の概要は準備中です。原文の説明を表示しています。