stream
無料Designing ETL/ELT pipelines, visualizing data flows, selecting batch/streaming approaches, and architecting Kafka/Airflow/dbt systems. Use when building data pipelines or managing data quality.
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概要と使いどころ
Designing ETL/ELT pipelines, visualizing data flows, selecting batch/streaming approaches, and architecting Kafka/Airflow/dbt systems. Use when building data pipelines or managing data quality.
日本語の概要は準備中です。原文の説明を表示しています。
MLOps and the production ML lifecycle -- model packaging and serving, CI/CD for ML, experiment tracking, model registries, reproducibility, production monitoring for data and concept drift, retraining pipelines, A/B and shadow deployment, and rollback. Covers batch vs online/real-time inference, REST endpoints, feature stores, data and version pinning, deterministic pipelines, performance-decay detection, and retraining triggers. Use when deploying models to production, serving predictions, monitoring for data or concept drift, setting up ML CI/CD, tracking experiments, managing a model registry, or planning retraining, shadow rollout, and rollback.
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Audit a MaaFramework/Maa-series project's Git history to learn how Pipeline JSON, interface options, Python AgentServer CustomAction code, and related data tables evolved. Use when asked to review a Maa project from initial commit through a target commit, map `action: Custom` pipeline nodes to `@AgentServer.custom_action(...)` implementations, find pipeline/custom/option patterns or breakages, and produce a report plus skill-improvement recommendations.
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Airbyte is the leading open-source data integration platform providing 600+ pre-built connectors for ELT pipelines from APIs, databases, and files to data warehouses, lakes, and lakehouses. It supports both self-hosted and cloud deployments with a no-code connector builder.
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Use when scraping JavaScript-heavy pages or SPAs, crawling multiple URLs concurrently, extracting structured data with reusable CSS/JSON schemas, or building automated web data pipelines. Wraps the Crawl4AI library (`crwl` CLI and Python SDK) with schema-generation patterns for LLM-free extraction. Triggers on crawl4ai, crwl, scrape JS-heavy site, scrape SPA, headless browser scrape, schema-based extraction, batch crawl, sitemap crawl, web data pipeline. SKIP when a static HTML page can be read with `defuddle` / `fetch-web` — those are faster cold-start and don't need a browser.
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Run the viz pipeline to render icons from existing glyphs. Entry point for the viz subproject covering palette generation, data building, manifest creation, and icon rendering for skills, agents, and teams. Always use build.sh as the pipeline entry point — never call Rscript directly.
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Orchestrate end-to-end machine learning pipelines using Prefect or Airflow with DAG construction, task dependencies, retry logic, scheduling, monitoring, and integration with MLflow, DVC, and feature stores for production ML workflows. Use when automating multi-step ML workflows from data ingestion to deployment, scheduling periodic model retraining, coordinating distributed training tasks, or managing retry logic and failure recovery across pipeline stages.
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Simulate supply chain and adversarial machine learning attacks by injecting poisoned data or targeted backdoors into training and fine-tuning datasets. Use this skill when assessing the integrity controls of MLOps pipelines or evaluating the resilience of AI models against highly targeted, stealthy manipulation intended to alter model behavior on specific triggers.
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Run this skill for Phase 3 of the evidence verification pipeline — the adversarial audit step. Use when you need to check the evidence data lake for bad data before ingestion: dead links, wrong URL formats (tree/ vs blob/), subjective wording ("elite", "high-quality"), stale migration notes, benchmark catalog misuse/vendor-claim leakage, or skills whose star evidence conflicts with classified evidence level. Triggers on phrases like: "audit the data lake", "adversarial check", "ev-adversarial-audit", "check for noise in evidence", "flag bad evidence", "run the audit phase", "quality check the by-type files", or any reference to Phase 3 of the pipeline.
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Unity data-driven design architecture. ScriptableObject config hierarchies, JSON data pipelines, designer handoff workflows, data versioning and migration, Inspector attributes for self-documenting configs. DECISION format: WHEN/DECISION/SCAFFOLD/GOTCHA. Based on Unity 6.3 LTS.
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Use when a task needs the judgment of a Bioinformatics Scientist — designing a differential-expression or GWAS analysis with correct multiple-testing correction, calling and triaging variants from NGS data using genotype-likelihood confidence rather than raw allele counts, interpreting a BLAST/DIAMOND homology search, choosing or building a genomics pipeline (aligner, caller, normalization method) for a specific data-generating process, or judging whether a computational-biology analysis's statistical design actually supports the biological claim being made. Distinct from a bioinformatics-technician (executes and QC-gates an established pipeline someone else designed) and a data-scientist (general product/experimentation judgment, not genomics-specific statistics) — this role owns which method and statistical model a genomics question requires, and why.
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Execute CUT&RUN processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing CUT&RUN or CUT&Tag data, an alternative to ChIP-seq with lower background. Trigger on: CUT&RUN pipeline, CUT&Tag, SEACR, Henikoff, targeted chromatin, pA-MNase, process CUT&RUN.
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Execute ENCODE RNA-seq pipeline from FASTQ to gene quantification and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing RNA-seq data with STAR alignment, RSEM/Kallisto quantification, or generating expression matrices. Trigger on: RNA-seq pipeline, gene expression, STAR alignment, RSEM quantification, transcript quantification, TPM, FPKM, RNA processing, run RNA-seq.
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Execute ENCODE DNase-seq pipeline from FASTQ to hotspots and footprints. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing DNase-seq data, calling DNase hypersensitive sites, performing footprinting analysis. Trigger on: DNase-seq pipeline, DNase hypersensitive, DHS, Hotspot2, footprinting, DNase I, chromatin accessibility DNase.
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Execute ENCODE ChIP-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Use when users need to process ChIP-seq data following ENCODE standards, run peak calling with MACS2, perform IDR analysis, or generate signal tracks. Trigger on: ChIP-seq pipeline, run ChIP-seq, process ChIP-seq, MACS2 peak calling, IDR analysis, ChIP-seq FASTQ processing.
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Execute ENCODE Hi-C pipeline from FASTQ to contact matrices and loop calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing Hi-C data, generating contact matrices, or calling loops. Trigger on: Hi-C pipeline, chromatin conformation, contact matrix, loop calling, TAD detection, Juicer, HiCCUPS, 3D genome.
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Execute ENCODE ATAC-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Handles Tn5 transposase offset correction, mitochondrial read removal, and nucleosome-free fragment selection. Use when users need to process ATAC-seq data following ENCODE standards. Trigger on: ATAC-seq pipeline, run ATAC-seq, process ATAC-seq, chromatin accessibility, open chromatin, Tn5 shift, TSS enrichment.
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Use ENCODE functional genomics data for disease mechanism research. Use when the user wants to connect GWAS variants to regulatory elements, annotate disease-associated loci with functional data, identify therapeutic targets from epigenomic data, build disease regulatory models, cross-reference with clinical trials and drug databases, or conduct any disease-focused, pathology-driven, or clinical variant interpretation workflow. Covers the full pipeline from disease-tissue mapping through GWAS variant annotation, heritability enrichment, cancer epigenomics, drug target identification, and clinical trial cross-referencing. Integrates ENCODE with Open Targets, PubMed, ClinicalTrials.gov, and bioRxiv.
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Cross-reference ENCODE data with PubMed, bioRxiv, ClinicalTrials.gov, Open Targets, GTEx, ClinVar, GWAS Catalog, gnomAD, Ensembl, and other scientific databases. Use when the user wants to find publications, preprints, or clinical trials related to ENCODE experiments, chain ENCODE data with other scientific MCP servers, or build translational pipelines from genomic data to clinical application.
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Track exact provenance for every operation on ENCODE data — tool versions, reference files, scripts, parameters, and timestamps — to enable publication-ready methods writing. Use when the user processes ENCODE files, runs any bioinformatics tool, creates filtered/merged datasets, runs pipelines, performs liftover, uses R/Python/Bash for analysis, or needs to document their analysis chain for reproducibility and publication. Also use when the user says "write me methods" to auto-generate methods sections from the provenance log. This skill implements comprehensive provenance documentation: every tool, every version, every reference file, every parameter, every accession — no shortcuts. Use this skill for ANY processing step, ANY file transformation, ANY analysis operation on ENCODE data.
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Spark, pandas, polars, DuckDB optimization for batch data processing. Activate on: batch processing, Spark optimization, polars, DuckDB, pandas performance, data frame, shuffle, partition, memory optimization. NOT for: streaming pipelines (use streaming-pipeline-architect), warehouse queries (use data-warehouse-optimizer).
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Processamento escalável de dados para workloads de ML. Execução em streaming em CPU/GPU, suporta Parquet/CSV/JSON/imagens. Integra-se com Ray Train, PyTorch, TensorFlow. Escala de uma única máquina para centenas de nós. Use para inferência em lote, pré-processamento de dados, carregamento de dados multi-modal ou pipelines distribuídos de ETL.
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Build scalable data pipelines, modern data warehouses, and real-time streaming architectures. Implements Apache Spark, dbt, Airflow, and cloud-native data platforms.
日本語の概要は準備中です。原文の説明を表示しています。
Data pipeline architecture, ETL/ELT patterns, data modeling, and production data platform design
日本語の概要は準備中です。原文の説明を表示しています。