Expert-level materials informatics covering materials databases, machine learning for property prediction, high-throughput computation, and data-driven materials discovery.
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Expert-level materials informatics covering materials databases, machine learning for property prediction, high-throughput computation, and data-driven materials discovery.
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vLLM: high-throughput LLM serving, OpenAI API, quantization.
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NVIDIA GPU上で大規模言語モデルの応答生成を高速化し、APIとして提供する設定を支援します。量子化や一括処理、複数GPUへの分散も扱います。
Deploys and configures Suricata IDS/IPS with Emerging Threats rulesets, EVE JSON logging, and custom rules for high-throughput, protocol-aware traffic inspection (HTTP, TLS, DNS, SMB) and SIEM integration. Use when running Suricata in IDS or inline IPS mode to detect or block malicious traffic, or when combining signature-based and protocol anomaly detection with file extraction.
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Build event streaming applications using Azure Event Hubs SDK for JavaScript (@azure/event-hubs). Use when implementing high-throughput event ingestion, real-time analytics, IoT telemetry, or event-driven architectures with partitioned consumers.
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Build real-time streaming applications with Azure Event Hubs SDK for Java. Use when implementing event streaming, high-throughput data ingestion, or building event-driven architectures.
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Azure Event Hubs SDK for Python streaming. Use for high-throughput event ingestion, producers, consumers, and checkpointing. Triggers: "event hubs", "EventHubProducerClient", "EventHubConsumerClient", "streaming", "partitions".
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Azure Event Hubs SDK for .NET. Use for high-throughput event streaming: sending events (EventHubProducerClient, EventHubBufferedProducerClient), receiving events (EventProcessorClient with checkpointing), partition management, and real-time data ingestion. Triggers: "Event Hubs", "event streaming", "EventHubProducerClient", "EventProcessorClient", "send events", "receive events", "checkpointing", "partition".
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Query protein-protein and gene interaction databases (STRING, BioGRID, IntAct, SIGNOR, Reactome, HuRI, HuMAP, OmniPath, ConsensusPathDB, DIP). Use when building PPI networks, choosing between physical vs functional vs genetic interactions, signed/directed vs undirected, high-throughput vs curated, picking confidence thresholds, aggregating across resources, or navigating license constraints. Encodes the database decision matrix, STRING v12 channel semantics, OmniPath as meta-database, SIGNOR for signed signaling, and per-resource rate limits.
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Deploy and manage vLLM for high-throughput LLM inference. Configure continuous batching, tensor parallelism, quantization, and OpenAI-compatible API endpoints for production LLM serving.
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The sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva package contains functions for the identifying and building surrogate variables for high-dimensi
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The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, an
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Uses DESeq2 to estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.
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EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. Thi
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The QFeatures infrastructure enables the management and processing of quantitative features for high-throughput mass spectrometry assays. It provides a familiar Bioconductor user experience to manages quantitative data across different assa
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The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose
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Python Materials Genomics library for structure analysis, thermodynamics, and electronic properties. Parse/create crystal structures (CIF, POSCAR), query Materials Project for DFT-computed properties, analyze phase and Pourbaix diagrams, compute XRD patterns, generate DFT inputs for VASP, Quantum ESPRESSO, CP2K. Alternatives: ASE (MD/geometry), AFLOW (high-throughput), OVITO (visualization).
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Structure prediction using Chai-1, a foundation model for molecular structure. Use this skill when: (1) Predicting protein-protein complex structures, (2) Validating designed binders, (3) Predicting protein-ligand complexes, (4) Using the Chai API for high-throughput prediction, (5) Need an alternative to AlphaFold2. For QC thresholds, use protein-qc. For AlphaFold2 prediction, use alphafold. For ESM-based analysis, use esm.
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Chai-1 structure prediction for protein complexes and design validation. Use this skill when: (1) Predicting protein-protein complex structures, (2) Validating designed binders, (3) Predicting protein-ligand complexes, (4) Using the Chai API for high-throughput prediction, (5) Need an alternative to AlphaFold2. For QC thresholds, use protein-design-qc. For AlphaFold2 prediction, use alphafold2-multimer. For ESM-based analysis, use esm2-sequence-scoring.
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Patterns for laboratory automation including liquid handling robotics, LIMS integration, protocol development, quality control, and high-throughput workflows. Covers both open-source (Opentrons) and commercial platforms. Use when ", " mentioned.
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ClickHouse is a columnar OLAP database built for real-time analytical queries over massive datasets. It supports a familiar SQL interface with powerful aggregation functions, materialized views for pre-computed rollups, and high-throughput inserts that make it ideal for event tracking, time-series analytics, and ad-hoc exploration of billions of rows.
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Reviews Elixir code for performance issues including GenServer bottlenecks, memory usage, and concurrency patterns. Use when reviewing high-throughput code or investigating performance issues.
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Go concurrency patterns for high-throughput web applications including worker pools, rate limiting, race detection, and safe shared state management. Use when implementing background task processing, rate limiters, or concurrent request handling.
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High-throughput inference on FriendliAI — optimized serving engine for low-latency, cost-efficient LLMs.
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