「nifti」の検索結果

Used for converting one CT DICOM series folder to a HU NIfTI volume with affine evidence. Not for multi-frame DICOM or clinical use.

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Read, write, and manipulate medical imaging data (DICOM, NIfTI, NRRD) in MATLAB. Covers Image Processing Toolbox functions (dicomreadVolume, niftiread, dicomContours, dicomanon) and Medical Imaging Toolbox enhanced APIs (medicalVolume, medicalImage, medicalref3d, extractSlice, updateOrientation). Use when reading medical files, listing DICOM series, extracting spatial referencing, changing orientation, working with RT structures, or anonymizing DICOM data. Some features require Medical Imaging Toolbox — see skill body and references for details.

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Register, segment, filter, resample 3D medical images (MRI, CT, microscopy) via SimpleITK Python; DICOM, NIfTI, multi-modal. Rigid/affine/deformable registration, threshold/region-growing segmentation, Gaussian/morph filtering, label stats, format conversion. Use to align volumes across timepoints/modalities, segment fluorescence, or convert DICOM→NIfTI.

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Used for running NV-Segment-CTMR on CT or MRI NIfTI volumes and recording label-map evidence. Not for clinical interpretation.

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Used for running NV-Segment-CT VISTA3D on CT NIfTI volumes and recording label-map evidence.

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Run NV-Reason-CT inference on user-provided 3D NIfTI chest or abdominal CT volumes for engineering and research workflows. Not for diagnosis, treatment, or clinical reporting.

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Runs standard or fixed-channel softmax finetuning of NV-Segment-CT VISTA3D on CT NIfTI image/label datasets, with optional MONAI-native MLflow tracking and checkpoint evidence. Uses softmax for predefined, mutually exclusive classes; keeps the standard workflow when point prompts or runtime-variable classes are needed. Not for clinical validation.

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Used for finetuning the NV-Generate-CTMR MAISI VAE from CT/MRI NIfTI datalists. Not for clinical or production data approval.

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Used for finetuning NV-Generate-CTMR MR-Brain v1 for T1, T2, FLAIR, SWI, or MRA data from a NIfTI datalist. Not for clinical or production data approval.

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Load this first for any task involving images, pictures, photos, scans, frames, volumes, or visual data — including reading, writing, filtering, enhancing, denoising, sharpening, deblurring, thresholding, segmenting, masking, detecting, finding or counting objects, removing backgrounds, measuring, comparing, registering, stitching, aligning, cropping, resizing, transforming, or analyzing. Use for image I/O (TIFF, PNG, JPEG, RAW, HDR), histograms, edge detection, color processing, morphology, geometric transforms, deep learning for images, quality assessment, and 3-D volume processing. Also triggers when users describe image problems (dark, noisy, blurry, low contrast, uneven lighting, hazy, color cast) or data exploration tasks (folder of images, characterize data, understand format). Handles microscopy (cells, particles) and general scientific imaging. Routes to sibling skills for medical imaging (DICOM, NIfTI), hyperspectral data, and visual inspection.

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Pure Python DICOM for medical imaging (CT, MRI, X-ray, ultrasound). Read/write DICOM, pixels as NumPy, edit tags, windowing (VOI LUT), PHI anonymization, build DICOM, series→3D volumes. Use histolab for WSI pathology; nibabel for NIfTI.

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Use when preparing a medical-imaging dataset (DICOM/NIfTI) for modelling. Profiles spacing, orientation, intensity, label integrity, foreground fraction and target volume, gates them against the plan, then plans and audits preprocessing and augmentation for leakage.

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Guide DeepMedic 0.8.4 workflows for multi-modal 3D NIFTI medical-image segmentation, including data preparation, model configuration, training, checkpoint continuation, inference, and CPU/CUDA troubleshooting.

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