「strain」の検索結果

Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.

日本語の概要は準備中です。原文の説明を表示しています。

Debug Ecto constraint violations - trace triggers, check migrations, find duplicate data. Use when seeing unique_constraint, foreign_key_constraint, or check_constraint errors.

日本語の概要は準備中です。原文の説明を表示しています。

Establishes a project's quality bar as a written contract and stops agents quietly lowering it. Interviews the user on which dimensions matter, supplies sane default thresholds when they have no number in mind, records everything in CONSTRAINTS.md, and watches the diff for a weakened bar — new @ts-ignore or eslint-disable suppressions, skipped or deleted tests, assertions stripped out, unimplemented stubs, thresholds edited down. Use when no quality bar is written down, when the user says "set up constraints" or "define our standards", when the user wants dimensions they care about — accessibility, web performance, coverage — set up as enforced constraints, when an agent keeps silencing checks or skipping tests to get to green, when you need a coverage or performance threshold and don't know what number to pick, or when an agent writes more code than anyone will read.

日本語の概要は準備中です。原文の説明を表示しています。

Internal downstream skill for ctf-sandbox-orchestrator. CTF-sandbox workflow for Kerberos delegation, SPN trust edges, S4U abuse, RBCD, constrained or unconstrained delegation, and service-ticket acceptance. Use when the user asks about constrained delegation, unconstrained delegation, RBCD, S4U, SPNs, ticket acceptance, or how a Kerberos trust edge turns into effective privilege under sandbox assumptions. Use only after `$ctf-sandbox-orchestrator` has already established sandbox assumptions and routed here.

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill for general PostgreSQL table design. **Trigger when user asks to:** - Design PostgreSQL tables, schemas, or data models when creating new tables and when modifying existing ones. - Choose data types, constraints, or indexes for PostgreSQL - Create user tables, order tables, reference tables, or JSONB schemas - Understand PostgreSQL best practices for normalization, constraints, or indexing - Design update-heavy, upsert-heavy, or OLTP-style tables **Keywords:** PostgreSQL schema, table design, data types, PRIMARY KEY, FOREIGN KEY, indexes, B-tree, GIN, JSONB, constraints, normalization, identity columns, partitioning, row-level security Comprehensive reference covering data types, indexing strategies, constraints, JSONB patterns, partitioning, and PostgreSQL-specific best practices.

日本語の概要は準備中です。原文の説明を表示しています。

Assembles microbial-community sequencing into metagenome-assembled genomes (MAGs) with metaFlye (ONT), metaSPAdes/MEGAHIT (Illumina), and hifiasm-meta/metaMDBG (PacBio HiFi), then recovers genomes via multi-binner consolidation (MetaBAT2, MaxBin2, CONCOCT, SemiBin2, VAMB -> DAS_Tool) and QCs them against MIMAG with CheckM2, GUNC, and GTDB-Tk. Covers why a metagenome is not a genome (uneven coverage, micro-diversity, strain collapse to consensus), differential-coverage binning, co-assembly vs per-sample, the rRNA-operon collapse that fails short-read MAGs, and strain resolution with inStrain. Use when reconstructing genomes from a microbiome, soil, ocean, or gut community, recovering MAGs, or resolving strain-level variation.

日本語の概要は準備中です。原文の説明を表示しています。

Automatically complete partial code snippets while satisfying semantic constraints including variable types, invariants, pre/post-conditions, interface contracts, and expected input/output behavior. Use when users provide incomplete code with specific requirements like "complete this function that takes a list and returns sorted unique elements" or "fill in this method body that must maintain the invariant that x stays positive" or "implement this interface method with these type constraints." Produces compilable, executable code with tests and a constraint satisfaction report.

日本語の概要は準備中です。原文の説明を表示しています。

Odoo 19 development knowledge base with 18 specialized guides covering Actions (ir.actions.*, cron jobs, server actions), Controllers (HTTP routing, endpoints, auth types), Data files (XML/CSV records, shortcuts, noupdate), API Decorators (@api.depends, @api.constrains, @api.ondelete, @api.onchange, @api.model, @api.private), SQL Constraints (models.Constraint replacing _sql_constraints), Database Indexes (models.Index), Module development (manifest, wizards, reports), Field types (Char, Text, Monetary, relational fields), Manifest configuration (__manifest__.py, dependencies, asset bundles), Mixins (mail.thread, mail.activity.mixin, mail.alias.mixin, utm.mixin), ORM Model methods (search, CRUD, domain filters, recordsets, CamelCase model naming), Migration scripts (pre/post/end hooks, data migration), OWL frontend components (hooks, services, lifecycle), Performance optimization (N+1 prevention, batch ops, _read_group), QWeb Reports (PDF/HTML, paper formats, barcodes, t-out), Security/ACL (record rules, field permissions, privilege-based groups, @api.private), Testing (TransactionCase, HttpCase, mocking, query count assertions), Transactions (savepoints, UniqueViolation, serialization failures), Translations (i18n, PO files, translatable fields), XML Views (list/form/search, kanban card templates, xpath inheritance, QWeb templates). Use when writing, reviewing, or debugging any Odoo 19 Python or XML code, creating or modifying modules, fixing performance issues, or looking up Odoo 19 API patterns and best practices. Includes CSS/SCSS asset authoring and review for Odoo addons.

日本語の概要は準備中です。原文の説明を表示しています。

Establishes a project's quality bar as a written contract and stops agents quietly lowering it. Interviews the user on which dimensions matter, supplies sane default thresholds when they have no number in mind, records everything in CONSTRAINTS.md, and watches the diff for a weakened bar — new @ts-ignore or eslint-disable suppressions, skipped or deleted tests, assertions stripped out, unimplemented stubs, thresholds edited down. Use when no quality bar is written down, when the user says "set up constraints" or "define our standards", when the user wants dimensions they care about — accessibility, web performance, coverage — set up as enforced constraints, when an agent keeps silencing checks or skipping tests to get to green, when you need a coverage or performance threshold and don't know what number to pick, or when an agent writes more code than anyone will read.

日本語の概要は準備中です。原文の説明を表示しています。

Internal downstream skill for ctf-sandbox-orchestrator. CTF-sandbox workflow for Kerberos delegation, SPN trust edges, S4U abuse, RBCD, constrained or unconstrained delegation, and service-ticket acceptance. Use when the user asks about constrained delegation, unconstrained delegation, RBCD, S4U, SPNs, ticket acceptance, or how a Kerberos trust edge turns into effective privilege under sandbox assumptions. Use only after `$ctf-sandbox-orchestrator` has already established sandbox assumptions and routed here.

日本語の概要は準備中です。原文の説明を表示しています。

Assembles microbial-community sequencing into metagenome-assembled genomes (MAGs) with metaFlye (ONT), metaSPAdes/MEGAHIT (Illumina), and hifiasm-meta/metaMDBG (PacBio HiFi), then recovers genomes via multi-binner consolidation (MetaBAT2, MaxBin2, CONCOCT, SemiBin2, VAMB -> DAS_Tool) and QCs them against MIMAG with CheckM2, GUNC, and GTDB-Tk. Covers why a metagenome is not a genome (uneven coverage, micro-diversity, strain collapse to consensus), differential-coverage binning, co-assembly vs per-sample, the rRNA-operon collapse that fails short-read MAGs, and strain resolution with inStrain. Use when reconstructing genomes from a microbiome, soil, ocean, or gut community, recovering MAGs, or resolving strain-level variation.

日本語の概要は準備中です。原文の説明を表示しています。

Assembles microbial-community sequencing into metagenome-assembled genomes (MAGs) with metaFlye (ONT), metaSPAdes/MEGAHIT (Illumina), and hifiasm-meta/metaMDBG (PacBio HiFi), then recovers genomes via multi-binner consolidation (MetaBAT2, MaxBin2, CONCOCT, SemiBin2, VAMB -> DAS_Tool) and QCs them against MIMAG with CheckM2, GUNC, and GTDB-Tk. Covers why a metagenome is not a genome (uneven coverage, micro-diversity, strain collapse to consensus), differential-coverage binning, co-assembly vs per-sample, the rRNA-operon collapse that fails short-read MAGs, and strain resolution with inStrain. Use when reconstructing genomes from a microbiome, soil, ocean, or gut community, recovering MAGs, or resolving strain-level variation.

日本語の概要は準備中です。原文の説明を表示しています。

Physics-based reasoning framework (Musk methodology) that deconstructs a problem to irreducible fundamental truths, classifies every element as hard constraint, soft constraint, or assumption, then reconstructs the optimal solution from fundamentals alone. USE WHEN first principles, fundamental truths, challenge assumptions, real constraint, rebuild from scratch, start over, physics first, question everything, reasoning by analogy. NOT FOR structural feedback loops (use SystemsThinking).

日本語の概要は準備中です。原文の説明を表示しています。

Read loop-constraints.md at the start of every run and enforce every rule. This skill runs BEFORE triage or any action skill. Constraints are binding.

日本語の概要は準備中です。原文の説明を表示しています。

Use this skill for any PostgreSQL database work — table design, indexing, data types, constraints, extensions (pgvector, PostGIS, TimescaleDB), search, and migrations. **Trigger when user asks to:** - Explore an existing PostgreSQL database to understand its objects and relationships - Design or modify PostgreSQL tables, schemas, or data models - Choose data types, constraints, indexes, or partitioning strategies - Work with pgvector embeddings, semantic search, or RAG - Set up full-text search, hybrid search, or BM25 ranking - Use PostGIS for spatial/geographic data - Set up TimescaleDB hypertables for time-series data - Migrate tables to hypertables or evaluate migration candidates - Plan or execute safe schema migrations with zero downtime **Keywords:** PostgreSQL, Postgres, SQL, schema, table design, indexes, constraints, pgvector, PostGIS, TimescaleDB, hypertable, semantic search, hybrid search, BM25, time-series, migration

日本語の概要は準備中です。原文の説明を表示しています。

Subtour-elimination methods for TSP, VRP, pickup/dropoff routing, and routing MIPs with binary arc variables. Use when route-continuity constraints may permit disconnected cycles and the model needs MTZ constraints, flow-based connectivity constraints, DFJ subset cuts, or lazy/iterative subtour cuts.

日本語の概要は準備中です。原文の説明を表示しています。

When throughput or latency is pipeline-limited, identify the single binding constraint and exploit, subordinate, elevate, then recheck—ignore non-constraints.

日本語の概要は準備中です。原文の説明を表示しています。

Assigns pathogen lineages (SARS-CoV-2 Pangolin UShER mode; Nextclade clade + QC; pango-designation alias resolution) and tracks variant frequencies over time using Nextstrain (Augur + Auspice), wastewater deconvolution (Freyja, COJAC, alcov, lineagespot), lineage-fitness modelling (multinomial logistic), and recombinant detection (3SEQ, RDP4, Bolotie). Covers Pangolin pangolin-data and Nextclade dataset version pinning (mandatory; lineage-defining mutations change with dataset), Freyja barcode forward-only date constraint, ARTIC primer scheme churn (V3/V4/V4.1/V5.3.2/Midnight) with dropout regions, and recombinant X-prefix designation lag. Use when assigning Pango lineages and Nextclade clades to viral consensus sequences, building Nextstrain Augur surveillance pipelines, deconvolving wastewater into lineage frequencies with Freyja, tracking lineage frequencies over time, handling ARTIC primer dropouts, or running surveillance for SARS-CoV-2/influenza/Mpox/RSV/H5N1/measles.

日本語の概要は準備中です。原文の説明を表示しています。

Debug Ecto constraint violations - trace triggers, check migrations; Use when seeing unique_constraint…

日本語の概要は準備中です。原文の説明を表示しています。

Compatibility alias for the Elixir/Phoenix plugin's Ecto constraint debugger. Invoke explicitly with /ecto:constraint-debug.

日本語の概要は準備中です。原文の説明を表示しています。

Use when you need to design, review, or improve validation in Quarkus applications — including Bean Validation on JAX-RS resources, @Valid on parameters and CDI beans, constraint groups, @ConfigMapping validation, custom constraints, nested DTO validation, and ExceptionMapper-based error mapping. This should trigger for requests such as Add validation support in Quarkus; Review Quarkus validation rules; Improve request validation in Quarkus REST APIs; Add custom validation constraints in Quarkus; Validate Quarkus @ConfigMapping properties. Part of Plinth Toolkit

日本語の概要は準備中です。原文の説明を表示しています。

Use when you need to design, review, or improve validation in Spring Boot applications — including Bean Validation on request DTOs, @Valid/@Validated at API boundaries, constraint groups, custom constraints, @ConfigurationProperties validation, nested DTO validation, and consistent validation error handling. This should trigger for requests such as Add validation support in Spring Boot; Review Spring Boot validation rules; Improve request validation in Spring Boot REST APIs; Add custom Bean Validation constraints in Spring Boot; Validate configuration properties in Spring Boot. Part of Plinth Toolkit

日本語の概要は準備中です。原文の説明を表示しています。

Use when you need to design, review, or improve validation in Micronaut applications — including Bean Validation on @Controller methods, @Body @Valid, query/path parameter validation, @ConfigurationProperties validation, custom constraints, nested DTO validation, and ExceptionHandler mapping for constraint violations. This should trigger for requests such as Add validation support in Micronaut; Review Micronaut validation rules; Improve request validation in Micronaut REST APIs; Add custom validation constraints in Micronaut; Validate Micronaut configuration properties. Part of Plinth Toolkit

日本語の概要は準備中です。原文の説明を表示しています。

Retrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API. Browse 520+ projects, look up per-project measure metadata, pull strain-level means (raw or LS-mean adjusted) and per-animal values, find measures by MP/VT ontology terms, and resolve strain nomenclature or gene coordinates. Use for QTL support, cross-strain comparison, mouse model selection, and ontology-driven phenotype discovery. Use monarch-database for disease-gene-phenotype knowledge graphs; ensembl-database for mouse genome annotations.

日本語の概要は準備中です。原文の説明を表示しています。