METAINFORMANT rules for directory src/metainformant/popgen. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
インストールする前に、エージェントに与えられる指示の中身を確認できます。
src/metainformant/popgenBefore editing files in this subtree:
AGENTS.md for this folder (canonical technical context).README.md.CLAUDE.md at repo root (uv, output/, .tmp/, real implementations).docs/REAL_IMPLEMENTATION_POLICY.md.metainformant.core.io for file I/O and metainformant.core.utils.logging for logs.Consolidates the population-genetics analysis surface: sequence-based
summary statistics, neutrality tests, two-population comparison, PCA /
kinship / HWE on genotype matrices, LD summaries, and demographic model
comparisons. The scenario analysis pipeline (as used by the synthetic
dataset workflow) is exposed via :func:analyze_dataset, with
scripts/popgen/ as its thin orchestrator.
Example: >>> from metainformant.popgen.workflow.analysis import summarize_scenario >>> result = summarize_scenario( ... ["ATCG", "ATCG", "GCTA"], label="demo" ... ) # doctest: +SKIP
import metainformant.popgen (submodules: from metainformant import popgen then popgen.<submodule>).uv run pytest tests/popgen -q (one pytest directory per invocation).Keep changes scoped; match existing patterns in this directory.
まだレビューはありません。使ってみた感想をお寄せください。
概要と使いどころ
METAINFORMANT rules for directory .agents. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
日本語の概要は準備中です。原文の説明を表示しています。
METAINFORMANT rules for directory .agents/workflows. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
日本語の概要は準備中です。原文の説明を表示しています。
METAINFORMANT rules for directory archive/scripts_reorganize. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
日本語の概要は準備中です。原文の説明を表示しています。
METAINFORMANT rules for directory config. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
日本語の概要は準備中です。原文の説明を表示しています。
METAINFORMANT rules for directory config/amalgkit. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
日本語の概要は準備中です。原文の説明を表示しています。
METAINFORMANT rules for directory config/config_base. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
日本語の概要は準備中です。原文の説明を表示しています。