abinit
無料Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
日本語の概要は準備中です。原文の説明を表示しています。
Route VASP calculation requests to the correct task type. Enforces VASP-specific policies for POTCAR, ENCUT, k-points, and slab handling.
日本語の概要は準備中です。原文の説明を表示しています。
実行スコア 未検証
インストール方法を見るインストールする前に、エージェントに与えられる指示の中身を確認できます。
Route VASP requests to the appropriate sub-skill based on the calculation type.
| User intent | Route to |
|---|---|
| Geometry optimization, relaxation, structural optimization | relax/SKILL.md |
| Single point energy, SCF calculation | static/SKILL.md |
| Density of states (DOS, PDOS, d-band center) | dos/SKILL.md |
| Band structure, electronic bands | band/SKILL.md |
| Vibrational frequencies, ZPE, thermodynamics | freq/SKILL.md |
| Ab initio molecular dynamics (AIMD) | md/SKILL.md |
POTCAR is handled automatically by the HPC engine based on the structure's elements. You do NOT need to specify POTCAR files. The engine uses the recommended POTCARs (e.g., Ti_pv, O, Ru_pv).
If the user requests specific POTCARs (e.g., _sv variants), pass them via:
wf.add_task(geo_opt, structure=s, POTCAR_MAP={"Ti": "Ti_sv", "O": "O"})
Default: 520 eV (suitable for most oxide catalysts).
Guidelines:
K-points are auto-generated from the structure's cell dimensions. Override with:
wf.add_task(geo_opt, structure=s, KPOINTS=[4, 4, 1]) # Gamma-centered
Slab guideline: use [N, N, 1] where N gives ~0.03 A^-1 spacing in-plane.
Default: ISPIN=1 (non-spin-polarized).
Set ISPIN=2 for:
wf.add_task(geo_opt, structure=s, ISPIN=2, MAGMOM="5*4.0 10*0.6")
For surface slabs, ALWAYS freeze bottom layers:
# Typical 4-layer slab: freeze bottom 2 layers
wf.add_task(geo_opt, structure=slab,
ISIF=2, # Fix cell shape (mandatory for slabs)
selective_dynamics=True,
freeze_layers=2) # Freeze bottom 2 layers
Rules:
For adsorption studies, consider DFT-D3:
wf.add_task(geo_opt, structure=s, IVDW=11, LDAU=False)
Only add if user requests it or the system involves weak interactions (physisorption, vdW heterostructures).
These are the system defaults. Only specify parameters that differ:
defaults.vasp:
ENCUT: 520
EDIFF: 1e-5
PREC: Accurate
ALGO: Fast
ISMEAR: 0
SIGMA: 0.05
LREAL: Auto
NELM: 200
ISPIN: 1
LORBIT: 11
LWAVE: False
LCHARG: False
NCORE: 4
wf.add_task(geo_opt, structure=bulk_json, ISIF=3, system_name="bulk_TiO2")
wf.add_task(geo_opt, structure=slab_json, ISIF=2,
freeze_layers=2, system_name="TiO2_110_slab")
opt = wf.add_task(geo_opt, structure=s, system_name="opt")
sp = wf.add_task("single_point", structure=opt.output.structure, system_name="SP")
opt = wf.add_task(geo_opt, structure=s, ISIF=2, freeze_layers=2, system_name="*OH")
frq = wf.add_task(freq, structure=opt.output.structure,
freeze_mode="layers", freeze_layers=4, system_name="*OH")
gib = wf.add_task(gibbs_energy, energy=opt.output.energy,
frequencies=frq.output.frequencies, system_name="*OH")
catgo_workflow_engine(action="create", params={"name": "VASP relaxation"})
# → {"workflow_id": "wf_xxx"}
catgo_workflow_engine(action="add_task", params={
"workflow_id": "wf_xxx",
"task_type": "geo_opt",
"software": "vasp",
"structure": "<json>",
"ISIF": 2,
"system_name": "slab_relax"
})
catgo_workflow_engine(action="submit", params={"workflow_id": "wf_xxx"})
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Generate and manage ABINIT DFT calculations. Use when the user requests ABINIT, or needs DFPT phonons, GW calculations, or BSE optical spectra.
日本語の概要は準備中です。原文の説明を表示しています。
Use when the user asks to place an adsorbate molecule on a surface, find adsorption sites, or set up a surface+adsorbate model for DFT.
日本語の概要は準備中です。原文の説明を表示しています。
Use when the user asks for adsorption energy, binding energy, or wants to compare how strongly a molecule binds to a surface.
日本語の概要は準備中です。原文の説明を表示しています。
Use when the user asks to analyze computational results: Gibbs free energy, OER/HER/CO2RR overpotentials, adsorption energy, convergence tests, DOS/d-band analysis, or Bader charge analysis.
日本語の概要は準備中です。原文の説明を表示しています。
Use AmberTools antechamber for molecular force field parameterization. Generates GAFF/GAFF2 parameters and AM1-BCC or RESP charges for use in AMBER or LAMMPS classical MD simulations.
日本語の概要は準備中です。原文の説明を表示しています。
One-shot recipes for adding, deleting, moving, and replacing individual atoms in the active CatGo viewer structure. Use whenever the user asks to "add an atom", "delete atoms", "remove this atom", "move atom N", "replace H with Li", or any single-atom edit — including "add a hydrogen on top of atom 12" / "delete atoms 5–9" / "swap the oxygen at site 3 for fluorine". Skips the discovery loop (no need to list structure tools or check adsorption sites first); goes straight to the matching `catgo_structure` action. Triggers in Chinese on 加原子, 删原子, 减原子, 移动原子, 替换原子, 增加氢, 删除氧, 把 ... 换成 ....
日本語の概要は準備中です。原文の説明を表示しています。