Dispatch WGS, WES, or targeted DNA variant requests to germline, somatic, or UMI-panel skills, then plan public nf-core/sarek, GATK4, DeepVariant, samtools, or bcftools workflows.
インストールする前に、エージェントに与えられる指示の中身を確認できます。
Use this skill as the DNA variant-calling dispatcher for WGS, WES, or targeted DNA panel analysis from FASTQ, BAM, or CRAM. Once the sample model is clear, hand off to the narrow subtype skill.
Confirm:
Route by biological/sample model:
ngs-dna-germline-variantsngs-dna-somatic-variantsngs-dna-umi-panel-variantsIf the request is ambiguous, ask only for the missing sample model and assay design needed to choose among these three. Do not run one generic variant workflow when the request needs subtype-specific assumptions.
Prefer nf-core/sarek for an end-to-end public workflow. Use direct GATK4, DeepVariant, samtools, or bcftools commands only for smaller, focused tasks or when the user explicitly wants a custom pipeline.
python plugins/ngs-analysis/scripts/ngs_preflight.py --pipeline dna_variant_calling --emit-install-plan
For a compact BAM/CRAM-to-VCF run with a matching reference FASTA, use the plugin-owned samtools/bcftools runner:
python plugins/ngs-analysis/scripts/run_dna_variant_calling.py \
--sample-sheet dna_samples.tsv \
--reference-fasta reference.fa \
--region chr20:1-100000 \
--filter-min-qual 30 \
--filter-min-site-dp 10 \
--execute
The sample sheet should include sample and bam or cram columns. When --region is provided the runner also emits per-base depth plus a callable-loci summary for that interval, and when filter thresholds are provided it emits a soft-filtered VCF alongside the raw calls. This package is suitable for focused local checks and run-envelope generation; subtype skills still own germline, somatic, UMI, reference-resource, cohort, annotation, and workflow assumptions.
This compact runner now writes advisory resources/resource_plan.json, resource_manifest.tsv, resource_env.sh, and resource_readiness.md artifacts for the selected genome bundle. Use --require-resource-plan when missing registered reference resources should block readiness; otherwise the explicit --reference-fasta remains enough for focused local checks.
Preflight-first nf-core pattern:
nextflow run nf-core/sarek \
-profile test,docker \
--outdir results/sarek_test
Real run skeleton:
nextflow run nf-core/sarek \
-profile docker \
--input samplesheet.csv \
--outdir results/sarek \
--genome GRCh38 \
--tools haplotypecaller,vep
For WES/panel data, include the target BED. For tumor-normal data, verify pair metadata before execution. For UMI panels, preserve barcode handling and molecule-level QC.
まだレビューはありません。使ってみた感想をお寄せください。
概要と使いどころ
Make data visualizations accessible and inclusive. Use when the user needs chart or diagram accessibility guidance, text alternatives for complex visuals, color and contrast review, keyboard support, reduced-motion behavior for animation or parallax, or an accessibility QA workflow for exported figures, UML-like diagrams, and dashboards.
日本語の概要は準備中です。原文の説明を表示しています。
Apply consistent photo adjustments across a set of images so they look like they were edited together. Use this skill whenever the user says "make my photos look cohesive", "give all these the same style", "apply a warm and golden feel to all of these", "make this cinematic", "match the look across my photos", "edit all my travel photos the same way", "batch edit these", "make these consistent", "fix my phone photos", or uploads a folder of photos and wants a unified, polished result. Also triggers for requests like "apply a preset to all of these", "make these look professional", or "they were shot in mixed lighting — can you fix them all". Outputs direct final image URLs plus an in-chat preview grid and optional Firefly Board link. Access: 🔐 Signed-In required | Gen AI: ❌
日本語の概要は準備中です。原文の説明を表示しています。
Use when a user wants to see their logo, design, or sketch on a product or scene mockup — mugs, t-shirts, business cards, hats, phone screens, posters, billboards, or similar. Triggers on "create mockups", "show my logo on products", or any logo upload with a request to visualize it on items. Access: 🔐 Signed-In required | Gen AI: ✅ Adobe Firefly via `image_generate` used for design creation, sketch polishing, and mockup scene generation
日本語の概要は準備中です。原文の説明を表示しています。
Resize, crop, or export any image or video into platform-ready social media assets using Adobe Creative Cloud tools. Use this skill when a user wants to prepare a photo, image, or video for one or more social platforms — Instagram, TikTok, LinkedIn, Facebook, YouTube, Snapchat, Pinterest, Threads, or X/Twitter. Triggers on: "prepare my image for Instagram", "resize for TikTok", "get this ready to post", "make versions for all platforms", "social media sizes", "crop for stories", "export for LinkedIn", "resize my video for social", "make social media assets", or any request to adapt a photo or video for specific platforms. Handles subject-aware cropping, AI canvas expansion, test previews before full runs, and same-ratio video resizing.
日本語の概要は準備中です。原文の説明を表示しています。
Create any visual design using Adobe Express templates — flyers, posters, social media posts (Instagram, Facebook, LinkedIn), business cards, invitations, greeting cards, resumes, cover letters, brochures, newsletters, certificates, presentations, YouTube thumbnails, email headers, logos, menus, and labels. Use this skill whenever the user wants to make, design, or build any visual — even if they just say "make me a flyer", "design a poster", "I need something for Instagram", "create an event invite", or "make a business card". Also handles browsing templates, editing text, replacing images, changing backgrounds, animating, and exporting designs. Access: 🔐 Signed-In required | Gen AI: ❌ by default — image replacement only where the surface permits generative AI (e.g. Codex); none on Claude
日本語の概要は準備中です。原文の説明を表示しています。
Create a punchy sizzle reel from a video using Adobe Quick Cut. Use this skill whenever a user wants to cut, trim, or shorten a video into highlights — including phrases like "make a sizzle reel", "make a highlight reel", "quick cut this", "cut the best parts", "shorten this video", "make a highlight clip", "summarize this video visually", or any request to produce a shorter edited version of a video. Use this skill for Quick Cut requests before suggesting manual editing in Premiere. Requires the user to upload a video file.
日本語の概要は準備中です。原文の説明を表示しています。