Prepare, launch, monitor, and summarize the real RFdiffusion to ProteinMPNN to Protenix antibody pipeline on a local or remote ScienceDiscovery Runner with sandboxed Ascend NPUs.
日本語の概要は準備中です。原文の説明を表示しています。
Operate GitCode issues, PRs, wikis, code/MR refs, and cached org templates. Use for gitcode.com, atomgit.com, GitCode issues/PRs, wiki, or /gitcode.
日本語の概要は準備中です。原文の説明を表示しています。
実行スコア 未検証
インストール方法を見るインストールする前に、エージェントに与えられる指示の中身を確認できます。
Project-local skill for sciencediscovery on gitcode.com (not under skills/).
New issues and pull requests for this repository are not filed here. Use
gh against openJiuwen-ai/sciencediscovery, and write
the title and body in English. This skill is for an existing GitCode mirror
item that still has to be read or commented on.
Use the command table below, gitcode schema, or gitcode <cmd> --help to
resolve flags. Only if a flag is still unclear, run
gitcode api repos/gitcode-cli/cli/contents/docs, select the download_url for
COMMANDS.md, AUTH.md, or AI-GUIDE.md, and read that
raw.gitcode.com content. Do not scrape GitCode blob-page HTML.
gitcode, never bare gc (often a git commit alias).uv; never commit CLI binaries or tokens.auth token / auth status --show-token).--json; if create/edit JSON is thin (missing html_url or with the wrong number), confirm with view/list.issue list's default --limit 30. Pass an explicit limit larger than the expected result set, check the returned JSON array length, and continue with --page 2, --page 3, … whenever a page length equals the requested limit. Stop only after a shorter page, then deduplicate by Issue number before counting.close/reopen/merge/delete…) need user intent + --yes.gitcode CLI; code/MR head → SSH git. HTTPS git easily fails (hangs without a credential helper; web/HTTPS fetches commonly return 403), so always use SSH and do not scrape gitcode.com HTML.openJiuwen/sciencediscovery (do not hard-code a login). Resolve <gitcode-login> from gitcode auth status --json. Push the source branch to that fork (common remote name gitcode-fork) and create with --head <gitcode-login>:<branch>. Do not git push origin <task-branch> onto openJiuwen/sciencediscovery. If the fork is missing: gitcode repo fork openJiuwen/sciencediscovery --json.gitcode.com and atomgit.com are hostnames for the same website/platform: repositories and their issue/PR numbers are identical. Do not treat AtomGit as a separate product. For authored or reported repo, issue, and PR URLs, prefer https://gitcode.com/...; rewrite AtomGit hosts and CLI html_url paths such as /merge_requests/N to these canonical forms:
https://gitcode.com/openJiuwen/sciencediscovery/issues/9https://gitcode.com/openJiuwen/sciencediscovery/pullshttps://gitcode.com/owner/repo/pull/Ngit@gitcode.com:owner/repo.git and git@atomgit.com:owner/repo.git are equivalent; prefer writing/configuring the gitcode.com form, even when an existing remote uses AtomGit.uv tool install gitcode-cli
export PATH="$HOME/.local/bin:$PATH"
gitcode version
gitcode auth status --json # need logged_in + token_valid
Token priority: GC_TOKEN > GITCODE_TOKEN > ~/.config/gc/auth.json.
No browser on box → user creates classic token at https://gitcode.com/setting/token-classic and runs gitcode auth login on a private TTY (do not ask them to paste token into chat).
Fallback install: uv venv .local/gitcode-venv && uv pip install --python .local/gitcode-venv gitcode-cli.
Binary resolve: command -v gitcode → $HOME/.local/bin/gitcode → .local/gitcode-venv/bin/gitcode.
PyPI stale: uv tool install --from 'https://gitcode.com/gitcode-cli/cli/releases/download/<ver>/gitcode_cli-<ver>-py3-none-any.whl' gitcode-cli.
Always pass -R owner/repo when not on cwd origin. Forms: owner/repo, HTTPS URL, SSH URL (CLI API only — not git transport).
| Need | Use |
|---|---|
| Title/body/state/comments/create/edit/review | gitcode … |
| Patch summary | gitcode pr diff N (text preferred; binaries have no preview) |
| Full tree / deep review | SSH remote git@gitcode.com:owner/repo.git; fetch refs/merge-requests/N/head |
| Scratch clone | .tmp/<repo-name>/ |
| Long bodies | .tmp/*.md + --body-file |
# issues
gitcode issue create -R owner/repo --title "…" --body-file body.md --json
# Complete inventory: 30 is the CLI default and is commonly truncated.
gitcode issue list -R owner/repo --state open --limit 100 --page 1 --json
gitcode issue view N -R owner/repo --json
gitcode issue view N -R owner/repo --comments --json
gitcode issue edit N -R owner/repo --body-file body.md --json
gitcode issue comment N -R owner/repo --body "…" --json
gitcode issue comments N -R owner/repo --json
gitcode issue comment edit <comment_id> -R owner/repo --body "…" # may not support --json
gitcode issue close N -R owner/repo --yes --json
gitcode issue reopen N -R owner/repo --yes --json
# PRs — sciencediscovery: source branch on the operator's own fork, never on origin
gitcode pr create -R openJiuwen/sciencediscovery --head <gitcode-login>:branch --base main --title "…" --body-file pr.md --json
gitcode pr create -R upstream/repo --head myfork:branch --title "…" --body-file pr.md --json
gitcode pr create -R owner/repo --head branch --fill --json
gitcode pr create -R owner/repo --head branch --title "WIP" --draft --json
gitcode pr list -R owner/repo --state open --json
gitcode pr view N -R owner/repo --json
gitcode pr view N -R owner/repo --comments --json
gitcode pr diff N -R owner/repo
gitcode pr edit N -R owner/repo --body-file pr.md --json
gitcode pr comment N -R owner/repo --body "…" --json
gitcode pr comment N -R owner/repo --body "…" --path path/to/file.py --position 12 --json
gitcode pr comments N -R owner/repo --json
gitcode pr reply N -R owner/repo --discussion <id> --body "…"
gitcode pr review N -R owner/repo --comment "…" --json # or --comment-file
gitcode pr merge N -R owner/repo --yes --json # optional --method squash|rebase
gitcode pr close|reopen|ready N -R owner/repo --yes --json
gitcode pr checkout N -R owner/repo
gitcode repo fork owner/repo --json
gitcode repo view owner/repo --json
gitcode schema
gitcode schema "issue create"
gitcode pr view changes its top-level JSON shape when comments are requested:
gitcode pr view N -R owner/repo --json returns the PR object directly.gitcode pr view N -R owner/repo --comments --json returns
{ "pull_request": <PR object>, "comments": [...] }.Do not read .number, .head, or .labels at the top level of the comments
form; those fields are below .pull_request. Optional arrays such as labels
may be null, so normalize them with // [] before iterating.
# PR metadata only
gitcode pr view N -R owner/repo --json |
jq '{number, title, state, head_sha: .head.sha,
labels: [((.labels // [])[]) | .name]}'
# PR metadata and comments
gitcode pr view N -R owner/repo --comments --json |
jq '{pr: (.pull_request | {number, title, state, head_sha: .head.sha}),
comments: [(.comments // [])[] |
{author: (.user.login // .author.login // .author_name),
body: (.body // .note // ""), created_at}]}'
Use gitcode pr comments N -R owner/repo --json when only the comment list is
needed.
For complete Issue inventories, treat length == --limit as “possibly truncated,” not as a final count. Fetch subsequent pages with the same filters until one returns fewer rows than the limit; combine the pages and deduplicate by .number. If the first page returns fewer than the explicit limit, it is complete for those filters at that retrieval time.
--position = line on the new file (right side of diff). Inline comments appear as comment_type: diff_comment.--approve: only with explicit user intent + approval permission; own-PR / missing role → 403 — leave a comment review instead.--request (request changes) unsupported; put change requests in --comment.pr create 409 / "same source branch already has an open MR !N": !N may be the PR this very call just created (observed on this repo), an earlier PR opened from the same branch, or one you should not touch. Never retry blindly and never rename the branch to dodge it. Read it back — gitcode pr view N -R owner/repo --json — compare base, head branch, head SHA, title, body, author, created time, and existing review activity against this attempt, then act on what !N actually is. Typical outcomes: this attempt landed ⇒ report !N; your own re-delivery on the same branch, where the MR already tracks the pushed head but title/body are stale ⇒ bring it up to date with gitcode pr edit N --body-file … instead of creating a second PR; head SHA still behind your push ⇒ confirm the push reached the fork before touching the PR; wrong base, another author, or review already under way ⇒ stop and report so the user can choose (edit, close, or a fresh branch). Judge from the read-back, not from the error text.gitcode pr view N -R owner/repo --json — title, body, SHAs, stategitcode pr diff N -R owner/repo — patch overview; prefer text output, and expect no binary previewgitcode api repos/owner/repo/pulls/N/files — structured file list / raw URLsgit fetch git@gitcode.com:owner/repo.git refs/merge-requests/N/head (GitCode MR ref; not HTTPS). Prefer this over scraping the web UI.[#32](https://gitcode.com/openJiuwen/sciencediscovery/issues/32).[#10](https://gitcode.com/openJiuwen/sciencediscovery/pull/10). Write /pull/N in authored links even if CLI html_url says /merge_requests/N.Fixes #32 ([#32](https://gitcode.com/openJiuwen/sciencediscovery/issues/32)).Fixes #N or its Markdown link will close the issue; commit messages alone do not auto-close.Template source order when filing an Issue/PR:
.gitcode/ Issue/PR templates, if present (openJiuwen/sciencediscovery currently has none).Language: a GitHub issue or pull request is English and is created with gh — see github. This section applies only when you are still editing an item on the GitCode mirror. There, default to the Chinese templates (ISSUE_TEMPLATE.zh/ + PULL_REQUEST_TEMPLATE.md / PULL_REQUEST_TEMPLATE.zh-CN.md). Use the English set (ISSUE_TEMPLATE.en/, PULL_REQUEST_TEMPLATE.en.md) only when the person who asked explicitly wants English on that mirror item.
Upstream (do not vendor into git): openJiuwen/.gitcode @ master, tree .gitcode/
(web: https://gitcode.com/openJiuwen/.gitcode).
Local cache (gitignored): {baseDir}/cache/openjiuwen-org-templates/.
FETCH="{baseDir}/scripts/fetch_openjiuwen_templates.py"
uv run --no-project "$FETCH" # ensure cache exists
uv run --no-project "$FETCH" --force # refresh after upstream changes
Layout is split per locale — there is no single ISSUE_TEMPLATE/ directory:
.gitcode/ISSUE_TEMPLATE.zh/*.yml # Chinese issue forms (default)
.gitcode/ISSUE_TEMPLATE.en/*.yml # English issue forms (+ config.yml)
.gitcode/PULL_REQUEST_TEMPLATE.md
.gitcode/PULL_REQUEST_TEMPLATE.zh-CN.md
.gitcode/PULL_REQUEST_TEMPLATE.en.md
Do not rely on any template inventory in this skill — lists go stale. At filing time:
…/cache/openjiuwen-org-templates/.gitcode/ (ISSUE_TEMPLATE.zh/, ISSUE_TEMPLATE.en/, PULL_REQUEST_TEMPLATE*). FETCH_META.json records what the last fetch wrote (issue_template_dirs, pr_templates), but read the files themselves before filling one in.--body-file.body order: write each attributes.label as a ### heading and put the answer below it; every item with validations.required: true is mandatory.config.yml is issue-form chooser config, not a template — never file it as an issue body.UPLOAD="{baseDir}/scripts/upload_image.py"
uv run --no-project "$UPLOAD" -R owner/repo .tmp/image.png --json
List the source directory first to confirm the actual filename; do not retype a path from memory. Then copy archived/non-ASCII paths to a simple ASCII name under .tmp/ before upload.
Prefer --json; continue only when the command exits 0 and stdout is a single JSON object with non-empty markdown and url fields (success prints no progress). The URL must use https://raw.gitcode.com/user-images/assets/…, never bare /uploads/…. Errors/warnings go to stderr only.
On non-zero exit or stderr containing error:, stop. Never paste stderr/error text into an issue/PR body or replace a failed image placeholder with an empty string.
Build comments and long bodies in .tmp/*.md without shell expansion (use an editor/patch or a single-quoted heredoc), then pass the file with --body-file; do not use $(cat <<EOF) around Markdown.
gitcode pr comment N -R owner/repo --body-file .tmp/comment.md --json
gitcode issue view N -R owner/repo --comments --json or gitcode pr comments N -R owner/repo --json. Confirm the comment contains the expected raw.gitcode.com embed and contains no error: file not found.raw.gitcode.com user-images URLs require auth — anonymous GET returns 403 no access right (verified platform behavior, not a broken link). Use the skill's download script, which reuses the same token resolution as upload_image.py and sends Authorization: Bearer <token>:
DOWNLOAD="{baseDir}/scripts/download_image.py"
# Bare URL or Markdown embed ; saves to .tmp/<filename> by default
uv run --no-project "$DOWNLOAD" "https://raw.gitcode.com/user-images/assets/<repo_id>/<uuid>/<file>" -o .tmp/issue44_img1.png --json
uv run --no-project "$DOWNLOAD" "" -o .tmp/x.png
https://raw.gitcode.com/... URL or a full Markdown embed  (e.g. copied straight from an issue body) and extracts the URL.--json; continue only when the command exits 0 and stdout is a single JSON object with "success": true, status: 200, and a content_type starting with image/ (success prints no progress). The saved file path is in path..tmp/<url-filename> if .tmp/ exists, else ./<url-filename>; pass -o to override. Non-ASCII filenames (e.g. 企业微信截图_*.png) are kept as-is — copy to an ASCII name before review if needed.error:, stop. Exit 4 means auth/403 (token missing, invalid, or expired — run gitcode auth status --json); exit 1 is a transport/server error. Never treat a 403 as a broken image link.gitcode issue view N --json / gitcode pr view N --json and extract raw.gitcode.com URLs from the body field before downloading.No gitcode wiki subcommand. Wiki is owner/repo.wiki (SSH git@gitcode.com:owner/repo.wiki.git), default branch main, entry Home.md. Prefer SSH.
gitcode version + auth status --json-Rview/list/diff; code via SSH MR ref) — no HTML scrape/pull/N or /issues/Npr create 409) means read back the cited !N and decide from its actual state, not from the message; never invent successPolicy: skill sources under .agents/skills/gitcode/ are tracked; cache/ is not. No binaries, no vendored templates, no secrets in skill files.
まだレビューはありません。使ってみた感想をお寄せください。
ログインなしで書き込めます。使ってみた感想、質問、動かなかった環境などを気軽にどうぞ。
まだコメントはありません。最初のコメントを書いてみませんか。
Prepare, launch, monitor, and summarize the real RFdiffusion to ProteinMPNN to Protenix antibody pipeline on a local or remote ScienceDiscovery Runner with sandboxed Ascend NPUs.
日本語の概要は準備中です。原文の説明を表示しています。
Independent multi-dimensional assessor for material design candidates. Loads configurable scoring rubrics to evaluate candidates from different expert perspectives. Each dispatch produces structured scores, pros/cons, and verification data without sharing results with other assessors.
日本語の概要は準備中です。原文の説明を表示しています。
Read, diagnose, and change the CI pipeline: GitHub Actions on pull requests, the merge queue, the nightly schedule and the release tag. Use when a job fails, when editing .github/workflows/, when asking which layer runs what, when reproducing a pipeline failure locally, or when a job needs the bubblewrap sandbox. Running the layers before proposing a change, and reading the result a proposal receives, belong to create-github-pr.
日本語の概要は準備中です。原文の説明を表示しています。
Verify cited paper identity and decide whether claims in an Artifact are supported by their linked Evidence using a governed source snapshot.
日本語の概要は準備中です。原文の説明を表示しています。
Use this skill when you need to write and execute Python/R code to process, transform, and analyze data, delivering reproducible computational results with complete code-level methodology documentation. Supports statistical analysis, data transformation, visualization, method justification, and structured result output.
日本語の概要は準備中です。原文の説明を表示しています。
Check whether numeric claims marked with Evidence aliases in an Artifact agree with the linked Evidence content and context.
日本語の概要は準備中です。原文の説明を表示しています。