Prepare, launch, monitor, and summarize the real RFdiffusion to ProteinMPNN to Protenix antibody pipeline on a local or remote ScienceDiscovery Runner with sandboxed Ascend NPUs.
日本語の概要は準備中です。原文の説明を表示しています。
Evaluate analysis results for quality and reliability. Scores Accuracy, Completeness, Robustness, and Relevance (0-10), checks source reliability and methodology, audits statistical rigor, and decides ACCEPT_AND_PROCEED or REVISE_AND_RETRY. NOT for performing analysis or modifying results.
日本語の概要は準備中です。原文の説明を表示しています。
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インストール方法を見るインストールする前に、エージェントに与えられる指示の中身を確認できます。
This skill evaluates analysis results against predefined criteria and decides ACCEPT_AND_PROCEED or REVISE_AND_RETRY. It follows a 4-phase protocol: criterion alignment → multi-dimensional evaluation with Source Reliability hard gate → statistical methodology audit → overall assessment. Hallucination detected → immediate REVISE; any checklist dimension FAIL → mandatory REVISE (hard gate, overrides scoring).
Always load this skill when:
code-engineer — has just produced as a Result PackageACCEPT_AND_PROCEED vs REVISE_AND_RETRY (or CONDITIONAL) decision before the results are used downstream (e.g. fed into a report, shared with stakeholders, or acted on)This skill evaluates analysis results with methodology documentation. Accepted input formats:
From code-engineer (recommended upstream skill):
--output-file JSON ([{col: val, ...}]) or CSV/MD export — provides the numerical/tabular resultsFrom other sources: any structured results with accompanying methodology description. Minimum required: results data + method description + data source identification.
If methodology documentation or data traceability is missing, note the gap in evaluation and flag Source Reliability as PARTIALLY_RELIABLE.
If you need to install new Python packages, install them through the Tsinghua PyPI mirror for reliability:
pip install [python package] -i https://pypi.tuna.tsinghua.edu.cn/simple
Identify the evaluation context:
Prerequisites: results must be available and parseable; methodology documentation and data traceability should be provided (evaluation quality degrades without them); criteria must be specified or inferable.
Map each result to an evaluation criterion. Flag UNMAPPED results and uncovered criteria. Infer criteria from context if missing (document as inferred).
Source Reliability Hard Gate (check first — hallucination → immediate REVISE_AND_RETRY, skip rest):
For computational-type results (from code-engineer and similar tools):
| Check | What to detect |
|---|---|
| Data traceability | Cited data sources exist (file/sheet/column match actual data, row counts consistent) |
| Method consistency | Stated methods match the actual code implementation |
| Fabrication | Invented statistics, untraceable numbers, results that cannot be reproduced from given code and data |
| Code-data alignment | Code actually references the claimed data files/variables, not different ones |
For research-type results (literature-based, citing external references):
| Check | What to detect |
|---|---|
| Data traceability | Cited data sources exist (file/sheet/field match actual data) |
| Reference validity | Citations have author+year+DOI/PubMed (not "studies show") |
| Identifier authenticity | Standard entity/gene/protein names (not self-created) |
| Method consistency | Stated methods match implementation |
| Fabrication | Invented statistics, fake references, untraceable results |
Verdict: RELIABLE (PASS) / PARTIALLY_RELIABLE (FAIL, continue) / UNRELIABLE (REVISE, stop).
Unified Evaluation Matrix — score each dimension 0-10; each dimension also has a PASS/FAIL threshold (score ≥5 → PASS, score <5 → FAIL):
| Dimension | 9-10 | 7-8 | 4-6 | 0-3 | PASS threshold |
|---|---|---|---|---|---|
| Accuracy | Correct, methods match | Minor errors | Significant errors | Fundamental errors | ≥5 |
| Completeness | Complete, no gaps | Minor gaps | Significant gaps | Major omissions | ≥5 |
| Robustness | Sound methods, assumptions verified | 1-2 concerns | 3-4 issues | Invalid methods | ≥5 |
| Relevance | Directly addresses question | Mostly relevant | Partially relevant | Irrelevant | ≥5 |
| Methodology | Justified, rigorous, reproducible | Adequate justification | Weak justification | No justification | ≥5 |
| Critical reflection | Assumptions stated, limitations discussed | Some reflection | Minimal reflection | No reflection | ≥5 |
Hard Gate Rule: any dimension FAIL (score <5) → mandatory REVISE_AND_RETRY, regardless of the average score. The scoring average determines the severity grading of the REVISE decision, not whether to REVISE.
Composite Quality Rating (applies only when all dimensions PASS):
| Average | Rating |
|---|---|
| ≥8.0 | ROBUST |
| 6.0-7.9 | ACCEPTABLE |
| 5.0-5.9 | NEEDS_IMPROVEMENT |
Modifiers from Phase 3 RISK items: ≥3 RISK items → downgrade 1 level.
Per-Result Decision (when all dimensions PASS):
| Average | Decision |
|---|---|
| ≥7.0 | ACCEPT_AND_PROCEED |
| 5.0-6.9 | CONDITIONAL — ACCEPT with stated limitations |
When any dimension FAIL: the decision is always REVISE_AND_RETRY. The severity is graded by how many dimensions FAIL and the average score of passing dimensions:
| Failure pattern | Severity |
|---|---|
| 1 dimension FAIL, avg of others ≥7 | MODERATE — targeted revision on failed dimension |
| 1-2 dimensions FAIL, avg of others 5-6.9 | SIGNIFICANT — broader revision needed |
| ≥3 dimensions FAIL, or all passing dims <5 | CRITICAL — fundamental re-approach required |
| Item | YES | NO → RISK |
|---|---|---|
| Multiple testing / FDR | Method documented (Bonferroni, BH) | False positives likely |
| Model assumption verification | Tested with documented results | Model may be invalid |
| Confounder control | Known confounders included, justified | Spurious associations |
| Sample size / power | Power analysis conducted | Underpowered — false negatives |
| Batch effect / heterogeneity | Correction applied if multi-source | Batch confounded |
| Outlier / missing data | Strategy documented | Biased results |
| Reproducibility | Code provided, executable | Unverifiable results |
Domain priorities: Biology → batch, confounders, multiple testing; Chemistry → reproducibility, assumptions; Materials → sample size, uncertainty; Finance → assumptions, confounders, outlier handling.
For each NO: record RISK, assess severity (H/M/L), include in guidance if ≥MEDIUM.
Output evaluation results per the Output Schema below.
Every evaluation must produce the following structure:
{
"verdict": "ACCEPT_AND_PROCEED | CONDITIONAL | REVISE_AND_RETRY",
"severity": "MODERATE | SIGNIFICANT | CRITICAL",
"quality_rating": "ROBUST | ACCEPTABLE | NEEDS_IMPROVEMENT",
"source_reliability": "RELIABLE | PARTIALLY_RELIABLE | UNRELIABLE",
"dimension_scores": {
"accuracy": 0-10,
"completeness": 0-10,
"robustness": 0-10,
"relevance": 0-10,
"methodology": 0-10,
"critical_reflection": 0-10
},
"dimension_status": {
"accuracy": "PASS | FAIL",
"completeness": "PASS | FAIL",
"robustness": "PASS | FAIL",
"relevance": "PASS | FAIL",
"methodology": "PASS | FAIL",
"critical_reflection": "PASS | FAIL"
},
"risk_items": [
{"item": "description", "severity": "H | M | L"}
],
"revision_guidance": ["top 3 prioritized action items"],
"limitations": ["accepted weaknesses, if CONDITIONAL"]
}
When presenting results to the user, format as a readable summary — not raw JSON. Highlight the verdict, failed dimensions (if any), and revision guidance (if REVISE).
| Domain | Key criteria | Score 9-10 | Score 0-3 |
|---|---|---|---|
| General — Data integrity | Missing values, duplicates, schema match | Clean data, transformations documented | Unchecked data quality |
| General — Calculation correctness | Formula verification, edge cases | Verified with test cases, edge cases handled | Unverified formulas |
| General — Output clarity | Labels, units, formatting | Clear labels, correct units, formatted tables | Ambiguous labels, missing units |
| Biology — Design validity | Controls, randomization, blinding | Proper controls + blinding documented | No controls |
| Biology — Statistical significance | p-values, correction, effect size | Corrected p-values + effect sizes + CI | Uncorrected only |
| Biology — Reproducibility | Protocol + code + data | Full protocol + code + raw data | No protocol, no code |
| Biology — Clinical relevance | Translational applicability | Clear relevance with limitations | Overgeneralized |
| Chemistry — Reaction reproducibility | Conditions, yields | Full conditions + error margins | Incomplete conditions |
| Chemistry — Characterization | Analytical methods coverage | NMR, XRD, MS, elemental all reported | Missing key methods |
| Chemistry — Computational validation | Theory-experiment agreement | Agreement within error, sensitivity tested | No comparison |
| Chemistry — Safety | Hazards, scalability | Safety documented, scalability assessed | No safety info |
| Materials — Measurement rigor | Standards, uncertainty | ASTM/ISO standards, uncertainty reported | Ad-hoc, no uncertainty |
| Materials — Sample prep | Reproducible synthesis, batch tracking | Reproducible with batch tracking | Single batch, no docs |
| Materials — Structure-property | Causal mechanism | Mechanistic link validated | Correlation without mechanism |
| Materials — Engineering applicability | Real-world constraints | Practical limits + failure modes assessed | Ideal conditions only |
| Finance — Risk-adjusted returns | Sharpe, drawdown, tail risk | Full risk metrics + tail risk | Raw returns only |
| Finance — Assumption validity | Distributional assumptions | Tested + regime detection | Assumed normality |
| Finance — Backtesting integrity | Out-of-sample, no leakage | Clean OOS, no data leakage | In-sample only, lookahead |
| Finance — Market microstructure | Costs, liquidity, slippage | Costs modeled, liquidity noted | Infinite liquidity assumed |
| Failure mode | Recovery |
|---|---|
| Results format mismatch | Attempt parse, mark CONDITIONAL, request re-format if REVISE |
| Criteria missing/vague | Infer from context, document as inferred |
| UNRELIABLE rating but ACCEPT | Flag contradiction: "ACCEPTED BUT RATED UNRELIABLE — verify" |
| No results to evaluate | Mark as evaluation failure |
| No code / unverifiable | Flag reproducibility NO with RISK, downgrade 1 level |
| Results irrelevant | Score Relevance ≤2 → FAIL → mandatory REVISE |
This skill works best in combination with code-engineer — load both for analysis tasks that require quality assurance. The typical workflow:
code-engineer performs the analysis and presents a Result Packageresult-evaluator evaluates the Result Package against quality criteriacode-engineer for re-analysisAnalysis task: "Correlate X and Y in dataset.csv and test statistical significance."
Structured data (--output-file JSON):
[
{"metric": "Pearson_r", "value": 0.8234},
{"metric": "p_value", "value": 0.0003},
{"metric": "sample_size", "value": 150}
]
Methodology documentation (from conversation):
scipy.stats.pearsonr, pandasData traceability:
dataset.csv, columns X (float64, 148 non-null) and Y (float64, 150 non-null), 150 rows totalAnalysis code:
import pandas as pd
from scipy import stats
data = pd.read_csv('dataset.csv')
corr, p_value = stats.pearsonr(data['X'], data['Y'])
print(f"Pearson correlation: r={corr:.4f}, p={p_value:.6f}")
Phase 1 — Criterion Alignment: Criteria inferred from task: statistical significance, method validity, data coverage. All three results map to criteria; no unmapped results or uncovered criteria.
Phase 2 — Source Reliability Hard Gate (computational-type):
pearsonr, which matches stated methoddata['X'] and data['Y'] from claimed filePhase 2 — Unified Evaluation Matrix:
| Dimension | Score | PASS/FAIL |
|---|---|---|
| Accuracy | 9 — r and p correct per method, sample size accurate | PASS |
| Completeness | 7 — includes r, p, n; missing confidence interval for r | PASS |
| Robustness | 6 — no normality test on X/Y before Pearson, 2 missing values in X not explained | PASS |
| Relevance | 9 — directly answers the correlation+significance question | PASS |
| Methodology | 7 — method justified (Pearson for continuous), but no assumption verification documented | PASS |
| Critical reflection | 5 — assumptions stated (continuous, linear) but limitations (outliers, non-linearity) not discussed | PASS |
All dimensions PASS → proceed to quality rating. Average: (9+7+6+9+7+5)/6 = 6.5 → ACCEPTABLE
Phase 3 — Statistical Methodology Audit:
RISK items: 3 (2 MEDIUM + 1 LOW). Modifier: ≥3 RISK → downgrade 1 level. ACCEPTABLE → NEEDS_IMPROVEMENT.
Phase 4 — Overall Assessment:
Verdict: REVISE_AND_RETRY
Severity: MODERATE
Quality Rating: NEEDS_IMPROVEMENT
Source Reliability: RELIABLE
Dimension Scores: Accuracy 9, Completeness 7, Robustness 6,
Relevance 9, Methodology 7, Critical Reflection 5
All dimensions: PASS
RISK Items:
- Model assumption verification: MEDIUM (normality not tested)
- Confounder control: MEDIUM (no confounders considered)
- Outlier/missing data: LOW (missing values not addressed)
Revision Guidance:
1. Test normality of X/Y before Pearson; use Spearman if non-normal
2. Document strategy for 2 missing values in X (drop or impute)
3. Identify and document potential confounders
Accepted Limitations: (none — REVISE)
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Prepare, launch, monitor, and summarize the real RFdiffusion to ProteinMPNN to Protenix antibody pipeline on a local or remote ScienceDiscovery Runner with sandboxed Ascend NPUs.
日本語の概要は準備中です。原文の説明を表示しています。
Independent multi-dimensional assessor for material design candidates. Loads configurable scoring rubrics to evaluate candidates from different expert perspectives. Each dispatch produces structured scores, pros/cons, and verification data without sharing results with other assessors.
日本語の概要は準備中です。原文の説明を表示しています。
Read, diagnose, and change the CI pipeline: GitHub Actions on pull requests, the merge queue, the nightly schedule and the release tag. Use when a job fails, when editing .github/workflows/, when asking which layer runs what, when reproducing a pipeline failure locally, or when a job needs the bubblewrap sandbox. Running the layers before proposing a change, and reading the result a proposal receives, belong to create-github-pr.
日本語の概要は準備中です。原文の説明を表示しています。
Verify cited paper identity and decide whether claims in an Artifact are supported by their linked Evidence using a governed source snapshot.
日本語の概要は準備中です。原文の説明を表示しています。
Use this skill when you need to write and execute Python/R code to process, transform, and analyze data, delivering reproducible computational results with complete code-level methodology documentation. Supports statistical analysis, data transformation, visualization, method justification, and structured result output.
日本語の概要は準備中です。原文の説明を表示しています。
Check whether numeric claims marked with Evidence aliases in an Artifact agree with the linked Evidence content and context.
日本語の概要は準備中です。原文の説明を表示しています。