Drafts or audits a scientific paper's introduction: real-world motivation, evidence audit, theory-to-if-then funnel with a named estimand, bridges across experiments, and calibrated contributions. Use to write, frame, or critique an introduction.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Reviews an existing conjoint study for threats to inference and returns severity-ranked findings on design, estimation, measurement error, external validity, and interpretation. Use when checking whether a conjoint design or analysis holds up, or answering referee comments on one.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Advises on setting up and validating topic models for survey and experimental text: discovery vs. measurement, STM/LDA/BERTopic choice, preprocessing, covariate formulas, choosing K across coherence, FREX, held-out likelihood, and residuals, validating topics against human coding, robustness, and reporting. Coding against a fixed codebook goes to text-classification.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Turns dictated captures in a deliverable's inbox/ into a proposed planning-wiki diff, classifying and tracing each statement; decisions need the author's assent. Use to intake notes or process the inbox.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Scaffold or audit a social-science replication package, and audit the manuscript and archived research objects against FAIR. Use when setting up or repairing a package, checking one before submission, or drafting data, code, and materials availability statements. Adapted from Yusaku Horiuchi's replication-package-guide.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Generates 3-5 conceptually distinct approaches (Novel, Surprising, Diverse, Conventional) and holds for selection before implementing. Use before committing to an approach when a task has more than one non-obvious solution; --codex delegates the brainstorm to a fresh subagent.
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scdenney/open-science-skills☆ 692026年10月23日 更新
OCR scanned or image-only corpora with vision-language models in four phases: `triage` inventories the scans, identifies script and language, and shortlists models by script, hardware, and data constraints; `evaluate` picks a system by measured CER/WER against ground truth, using born-digital twins, a second reader, and decision rules set in advance; `run` builds the production pipeline; and `clean` removes model artifacts, audits what every cleaning rule deletes, corrects with rule-based and LLM passes, and records provenance. Born-digital documents with a text layer go to $doc-to-markdown; runs on Leiden's ALICE cluster add $vlm-ocr-alice.
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scdenney/open-science-skills☆ 692026年10月23日 更新
House rules and craft for LaTeX Beamer decks (storyboarding, slide prose, frame budgets, layout, XeLaTeX and Korean fonts, color, figures, Overleaf hygiene, build QA). Use to write, edit, review, or build a Beamer deck.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Turns a raw Qualtrics conjoint export into analysis-ready long-format data: implementation identification, reshaping, choice-profile alignment, reference categories, and pilot exclusion. Use when a conjoint CSV needs cleaning, reshaping, or debugging before AMCE estimation.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Opens a talk, module, paper, chapter, or referee report as a multi-session deliverable. Interviews the author, then scaffolds deliverable.yml, HANDOFF.md, the planning/ wiki, inbox/, and checks/. Use for deadline-driven work spanning sessions.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Organize an author's response to peer review: extract every referee point, order the revision by dependency, flag possible pushbacks, and build the response-letter skeleton the author fills in. Use for revise-and-resubmit planning, response letters, or checking every point was answered.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Operate or audit a live Qualtrics survey via the v3 APIs without breaking fielding: publish gating, quotas, flow routing, embedded data, panel-vendor redirects, read-back verification, and a read-only pre-fielding audit. Use when publishing or patching a fielding instrument, when a quota counts but never blocks, or before launch.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Reviews a whole deliverable against its manifest without rewriting it — deterministic gate, per-section finders, a whole-work pass, and adjudicated findings.json and report.md with honest coverage. Use before shipping a deliverable or for the night shift.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Writes or reviews a pre-analysis plan before data collection: registry choice (OSF, AEA, AsPredicted, registered reports), locked models and decision rules, code run on simulated data, contingencies, and deviation records. Use when drafting or auditing a pre-registration or PAP, choosing a registry, or handling a deviation.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Orchestrate complex work from an active gpt-6-astra or gpt-6.1-sol Codex session. The detected lead owns decomposition, integration, and verification; Astra keeps the hardest reasoning in the lead, while Sol escalates unusually difficult units to Astra. Both route bounded work to Sol at medium effort, mechanical work to Luna, and can use a cross-vendor Claude peer. Not for routine single-context work. Use when the user explicitly asks to orchestrate, delegate, fan out, parallelize, assign subagents, obtain independent checks, or have Codex act as tech lead.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Run one consequential, contestable decision through a deliberative committee of GPT-6 Astra and Claude Opus, chaired by fable (default), astra, opus, or sol. Not for factual lookups, brainstorming, routine implementation, independent-coder reliability, or final professional judgment. Use when several options are defensible and the two model families should propose, critique, revise, and cross-rank under a predeclared rubric.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Audit a methods section against a 45-item checklist drawn from the APSA Experimental Section rubric, JARS-Quant, CONSORT, and DA-RT. Use before submission or archiving, or to document a pre-analysis-plan deviation.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Designs and diagnoses list experiments (the item count technique): whether indirect measurement is warranted, control-list construction, design variants, estimators and assumption tests in the list package, and power. Use when measuring a sensitive item or debugging an implausible prevalence estimate.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Draft a referee report on someone else's manuscript for a journal editor, using five adversarial finders, a Blue Team error filter, a Chief Reviewer synthesis, and a Tone Guard legal pass. Use when the user has been asked to referee a manuscript; self-audits go to paper-review-lite or presubmit, author responses to referee-response.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Turns a theory into falsifiable, pre-registerable hypotheses: DGP and DAG, identification, estimands, SESOIs, test choice among NHST, equivalence, and minimum-effect tests, scope conditions, and hypothesis tiers. Use when converting a research question into testable predictions or predicting a null.
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scdenney/open-science-skills☆ 692026年10月23日 更新
End-of-session closure. Records what changed into the project's own handoff and log files, separating verified from attempted work, and reports what is uncommitted. Use when wrapping up a session. Twin of sitrep.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Fact-check manuscript claims against their cited sources in a per-source Markdown knowledge base. Use to audit claim support, overclaiming, direction, scope, and misattribution after source intake is complete.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Design and format publication-quality figures. Use for chart choice, color, scales, legends, captions, accessibility, and reproducible figure workflows.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Read or convert documents (PDF, Office, OpenDocument, RTF, EPUB, CSV) in a research workflow: read directly or convert, pick the converter from document structure, and decide whether the Markdown is tracked or scratch. Use when a document must be read, quoted, summarized, searched, extracted, or added to a source library; scans go to $vlm-ocr.
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scdenney/open-science-skills☆ 692026年10月23日 更新