Runs the GPU part of a vlm-ocr pipeline on Leiden University's ALICE cluster. Decides whether a corpus needs ALICE, picks a GPU partition for the model, sets up storage, a pinned vLLM environment and offline weights, ships code and scans, runs a gate job and chained bulk jobs with the bundled SLURM template, and brings the page records home for post-processing. Use with vlm-ocr when OCRing scans on ALICE or deciding whether to.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Run the GPU part of a $vlm-ocr pipeline on Leiden University's ALICE cluster: decide whether a corpus needs ALICE, pick a GPU partition for the model, set up storage, a pinned vLLM environment and offline weights, ship code and scans, run a gate job and chained bulk jobs with the bundled SLURM template, and bring the page records home for post-processing. Use with $vlm-ocr when OCRing scans on ALICE or deciding whether to.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Spawn full peer Codex or Claude sessions in their own panes and git worktrees — real sessions, not subagents — briefed by the lead and merged back. Not for bounded consults a subagent covers. Use when work must outlive or run beside this session, needs its own worktree, or must stay user-steerable.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Runs several language models as independent coders on the same labeling or discovery task and reads their disagreement as data — panel assembly for model diversity, keeping votes independent, consensus rules, agreement statistics (Cohen's and Fleiss kappa, Krippendorff's alpha), the correlated-errors caveat that stops agreement being mistaken for validity, human validation beyond the panel, and reporting. Use when the user asks about a council, panel, ensemble, or jury of models, asks how to combine several models' labels, or asks what kappa or alpha to report for model coders. Single-model codebook and validation work goes to text-classification, per-item confidence to llm-calibration-logprobs.
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scdenney/open-science-skills☆ 692026年10月23日 更新
生成 MaaFramework Pipeline 项目的可交互状态机图谱。当用户想"看 Pipeline 节点关系"、"画状态机图"、"画 Mermaid 图"、"看 node 间关系"、"找孤立节点 / orphan node"、"看 Python 怎么驱动 Pipeline"、"看 interface.json 入口"、"调试跨文件 next 引用"、"重构前理清架构" 时使用。**任何涉及 MaaFramework 节点关系可视化的需求都用这个 skill**,即便用户没明确说"画图"。
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KhazixW2/MaaGumballs☆ 692026年10月15日 更新
Guides writing and editing Mermaid diagrams in GitHub-rendered Markdown so they remain readable across themes and preserve placeholder labels.
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zoltanmaric/coppersushi☆ 692026年10月20日 更新
Advises on setting up and validating topic models for survey and experimental text. Covers the discovery-versus-measurement question, choosing STM, LDA, or BERTopic, preprocessing consequences, prevalence and content formulas, topic-count selection across coherence, exclusivity and FREX, held-out likelihood, and residuals, validation of topics against human judgment, robustness, and DA-RT-compliant reporting. Use when the user has open-ended responses or another corpus and asks what topics are present, how many topics to use, about STM, searchK, coherence, or FREX, or wants topic prevalence compared across treatment arms or countries. Fixed-codebook coding goes to text-classification.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Generates 3-5 conceptually distinct approaches (Novel, Surprising, Diverse, Conventional) and holds for selection before implementing. Use before committing to an approach when a task has more than one non-obvious solution; --codex delegates the brainstorm to a fresh subagent.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Drafts or audits a scientific paper's introduction: real-world motivation, evidence audit, theory-to-if-then funnel with a named estimand, bridges across experiments, and calibrated contributions. Use to write, frame, or critique an introduction.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Consult an independent, read-only GPT-6 Astra advisor before committing to a substantive interpretation, approach, or final result. Not for routine work, implementation, or file edits. Uses gpt-6-astra at an effort matched to the question.
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scdenney/open-science-skills☆ 692026年10月23日 更新
House rules and craft for LaTeX Beamer decks (storyboarding, slide prose, frame budgets, layout, XeLaTeX and Korean fonts, color, figures, Overleaf hygiene, build QA). Use to write, edit, review, or build a Beamer deck.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Reviews a whole deliverable against its manifest without rewriting it — deterministic gate, per-section finders, a whole-work pass, and adjudicated findings.json and report.md with honest coverage. Use before shipping a deliverable or for the night shift.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Opens a talk, module, paper, chapter, or referee report as a multi-session deliverable. Interviews the author, then scaffolds deliverable.yml, HANDOFF.md, the planning/ wiki, inbox/, and checks/. Use for deadline-driven work spanning sessions.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Read or convert documents (PDF, Office, OpenDocument, RTF, EPUB, CSV) in a research workflow: read directly or convert, pick the converter from document structure, and decide whether the Markdown is tracked or scratch. Use when a document must be read, quoted, summarized, searched, extracted, or added to a source library; scans go to $vlm-ocr.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Design and format publication-quality figures. Use for chart choice, color, scales, legends, captions, accessibility, and reproducible figure workflows.
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scdenney/open-science-skills☆ 692026年10月23日 更新
End-of-session closure. Records what changed into the project's own handoff and log files, separating verified from attempted work, and reports what is uncommitted. Use when wrapping up a session. Twin of sitrep.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Turns a theory into falsifiable, pre-registerable hypotheses: DGP and DAG, identification, estimands, SESOIs, test choice among NHST, equivalence, and minimum-effect tests, scope conditions, and hypothesis tiers. Use when converting a research question into testable predictions or predicting a null.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Draft a referee report on someone else's manuscript for a journal editor, using five adversarial finders, a Blue Team error filter, a Chief Reviewer synthesis, and a Tone Guard legal pass. Use when the user has been asked to referee a manuscript; self-audits go to paper-review-lite or presubmit, author responses to referee-response.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Designs and diagnoses list experiments (the item count technique): whether indirect measurement is warranted, control-list construction, design variants, estimators and assumption tests in the list package, and power. Use when measuring a sensitive item or debugging an implausible prevalence estimate.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Audit a methods section against a 45-item checklist drawn from the APSA Experimental Section rubric, JARS-Quant, CONSORT, and DA-RT. Use before submission or archiving, or to document a pre-analysis-plan deviation.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Reviews an existing conjoint study for threats to inference and returns severity-ranked findings on design, estimation, measurement error, external validity, and interpretation. Use when checking whether a conjoint design or analysis holds up, or answering referee comments on one.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Run one consequential, contestable decision through a deliberative committee of GPT-6 Astra and Claude Opus, chaired by fable (default), astra, opus, or sol. Not for factual lookups, brainstorming, routine implementation, independent-coder reliability, or final professional judgment. Use when several options are defensible and the two model families should propose, critique, revise, and cross-rank under a predeclared rubric.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Orchestrate complex work from an active gpt-6-astra or gpt-6.1-sol Codex session. The detected lead owns decomposition, integration, and verification; Astra keeps the hardest reasoning in the lead, while Sol escalates unusually difficult units to Astra. Both route bounded work to Sol at medium effort, mechanical work to Luna, and can use a cross-vendor Claude peer. Not for routine single-context work. Use when the user explicitly asks to orchestrate, delegate, fan out, parallelize, assign subagents, obtain independent checks, or have Codex act as tech lead.
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scdenney/open-science-skills☆ 692026年10月23日 更新
Writes or reviews a pre-analysis plan before data collection: registry choice (OSF, AEA, AsPredicted, registered reports), locked models and decision rules, code run on simulated data, contingencies, and deviation records. Use when drafting or auditing a pre-registration or PAP, choosing a registry, or handling a deviation.
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scdenney/open-science-skills☆ 692026年10月23日 更新