效率提升技能

Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.

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Workflow for constraint-based metabolic modeling, context-specific models, gene essentiality, and systems-level interpretation.

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Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready maps.

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Workflow for small RNA and miRNA preprocessing, quantification, differential analysis, and target-oriented interpretation.

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Workflow for foundational sequence parsing, conversion, compression handling, and interval-aware file validation.

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Workflow for gene and transcript quantification from RNA-seq reads using alignment-based or alignment-free tools.

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Workflow for sequencing read QC, trimming, contamination screening, and pre-alignment cleanup.

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Workflow for orchestrating reproducible omics pipelines with workflow engines and clear execution provenance.

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Workflow for outbreak-style pathogen genomics, surveillance, lineage assignment, and transmission-oriented comparative analysis.

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Workflow for haplotype phasing, genotype imputation, reference-panel matching, and imputation QC.

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Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.

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Workflow for integrating matched or partially matched omics layers into shared latent structure and cross-modal interpretation.

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Workflow for nanopore or PacBio long-read QC, alignment, polishing, methylation-aware analysis, and structural variant discovery.

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Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.

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Workflow for Hi-C and related 3D genomics analyses including compartments, loops, TADs, differential contacts, and visualization.

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Workflow for regulatory network inference, regulon scoring, perturbation-aware comparison, and network visualization.

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Workflow for RNA modification analysis such as m6A peak calling, differential modification, and transcript-level visualization.

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Workflow for orthology, synteny, ancestral reconstruction, and evolutionary comparison across genomes.

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Python-first workflow for bulk RNA-seq expression intake, normalization, sample QC, and downstream-ready matrices.

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Workflow for event-level and isoform-level splicing analysis with sashimi-ready outputs and splice QC.

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Workflow for fine-mapping, colocalization, mediation, pleiotropy analysis, and Mendelian randomization.

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Workflow for methylation alignment or calling, DMR analysis, methylation QC, and locus-level interpretation.

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Workflow for amplicon microbiome analysis including denoising, taxonomy assignment, diversity analysis, and differential abundance.

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Workflow for de novo assembly, scaffolding, polishing, contamination review, and assembly QC.

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