plurigrid

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.

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World BOB Skill

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This skill is the **deep interleaving** of the five BKP 2-monad theory skills:

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Complement to alice-emacs-mods. Covers what alice does not — ghostel mastery, multi-daemon orchestration, cross-session coordination, debug/recovery harness, REPL-as-dynamical-citizen, QRTP distribution, strobe internals, and the hard-won lessons from spawning and debugging live REPLs under the server daemon. Read alongside alice-emacs-mods; together they tile the total Emacs-mod space on this machine.

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bmorphism's GitHub stars (2155 repos) and created repos - a curated index of applied category theory, MCP servers, and xenomodern tooling.

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Stanford FDCI research bridge connecting Dan Boneh's cryptographic primitives (ZK proofs, BLS signatures, threshold cryptography) with Tim Roughgarden's mechanism design (TFM, MEV mitigation, welfare maximization).

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Interactive assistant for intercepting, debugging, analyzing and reviewing Claude Code API requests using mitmproxy. Guides setup, certificate configuration, and active traffic inspection via web or CLI interface. Supports learning Claude Code internals, debugging issues, and optimizing API usage.

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> Formal oracle for behavioral equivalence via bisimulation games. Triggers: behavioral equivalence check, bisimulation game, are two systems equivalent, did a skill update preserve behavior, attacker-defender game, partition refinement, distinguishing trace. >>>>>>> origin/main

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Documentation and orchestration for the bmorphism/ies flox environment toolkit

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GitHub interactome explorer for bmorphism/plurigrid ecosystem. Maps collaborations across AlgebraicJulia, Topos Institute, Anthropic, and MCP servers. Use for discovering cobordisms between research communities.

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Babashka and ClojureScript runtime selection guidance by @borkdude

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CatColab Decapodes - Discrete Exterior Calculus for PDE modeling on meshes via Decapodes.jl integration. Model physics equations compositionally with automatic code generation.

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Chemical reaction network modeling with Catalyst.jl. Autopoietic systems, unit-aware ODEs, and interacting subsystems.

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Rust package manager (36 subcommands).

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CatColab Ologs (Ontology Logs) - category-theoretic knowledge representation where objects are concepts and morphisms are functional relationships. Foundation for database schemas and conceptual modeling.

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Coordinated botnet takedown methodologies — sinkholing, infrastructure mapping, legal frameworks, BGP intervention, and post-disruption analysis. Studies Operation Endgame, Badbox 2.0, and emerging blockchain C2 countermeasures. Defensive disruption for authorized law enforcement, CERT, and academic research contexts.

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Sheaves on time categories for compositional temporal reasoning. Bumpus et al. narrative framework with adhesion filter FPT algorithms and Gay.jl color integration.

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Browser History ACSet

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bmorphism Video Archive Interleave

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Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).

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Community knowledge from bivector.net - GA tutorials, discussions, and best practices

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Go-based security techniques from "Black Hat Go" extended with macOS, Cloud, Mobile, IoT, Supply Chain, API, Web3, AI/ML, Red Team, ATT&CK, and LLM chapters. 186 techniques, 36 tools, 33 defenses across 37 chapters. Includes adversarial bisimulation games with Ungar (order-dependent) and join-semilattice structures. AAIF-compatible multiplayer agent games for human-agent security exercises.

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bmorphism Diagrams

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Category Theory Tripartite: SICP generic dispatch, CTP Racket categories, CatColab double theories across 3 parallel worldlines with GF(3) conservation

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