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Open-source embedding database for AI applications. Store embeddings and metadata, perform vector and full-text search, filter by metadata. Simple 4-function API. Scales from notebooks to production clusters. Use for semantic search, RAG applications, or document retrieval. Best for local development and open-source projects.
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PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug discovery, protein modeling, or knowledge graph reasoning. Best for custom model development, protein property prediction, retrosynthesis. For pre-trained models and diverse featurizers use deepchem; for benchmark datasets use pytdc.
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Code quality patterns and guidelines for ToolUniverse tool development. Apply when writing, fixing, or refactoring tool Python code in the ToolUniverse project. Encodes lessons from 80+ debug rounds. Use alongside devtu-fix-tool and devtu-self-evolve. Triggers: implementing tool fixes, writing new tool classes, reviewing tool code quality, checking schema correctness, looking up API-specific bug fixes.
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Stellar dApp / frontend development. Covers the JavaScript stellar-sdk (browser + Node.js), Freighter wallet, Stellar Wallets Kit (multi-wallet), Wallet Standard, smart accounts with passkeys, transaction building / signing / submission, smart contract invocation from the client, simulation, and error handling. Use when building a React/Next.js/Node.js app that talks to Stellar — classic operations or smart contracts.
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Scrap and regenerate the in-flight EF migrations on the current branch as one consolidated migration. Use when migrations have accumulated mid-development cruft (added/removed columns, stacked add-column-to-existing-table fixes, hand-edited SQL that needs to come out, schema changes that should have been one migration but ended up as five), or when the branch has merged main and its migrations are now stuck mid-chain so `dotnet ef migrations remove` is unsafe. Triggers on phrases like 'regen the migrations', 'redo these migrations', 'scrap and regen migrations', 'consolidate the in-flight migrations', 'redo the migration stack', or any time an agent hits the mid-chain situation in `memory/architecture/migration-regen-after-rebase.md`.
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Ultrawork - high-quality 5-phase development workflow with 11 review steps out of 17
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Create AI governance policies for responsible development and deployment. TRIGGERS - Use when user needs help with ai-governance-policy related tasks.
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Cooks and packages a shippable CARLA server from a UE 5.8 ue58-dev checkout via the CMake `package` targets (shipping/development/debug/test), scoping the cook with CARLA_MAPS_TO_COOK, and inspects an existing package for the failures a green build hides — stale pak/ucas mismatch, missing staged OpenDrive/TM road data, missing post-process profiles, and Town15's uncookable content. Use when the user asks to "package CARLA UE5", "cook a map", "build a shipping server", "make a distributable CARLA", or a package builds but renders black / has no maps.
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Unity 6 UI development guide. Use when building user interfaces, menus, HUD, buttons, or any UI elements. Covers UI Toolkit (recommended for new projects — USS, UXML, UI Builder, data binding), uGUI/Canvas (legacy runtime UI), and IMGUI. Based on Unity 6.3 LTS documentation.
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Bulk mode — maximum development speed by spending tokens aggressively on massive parallel sub-agents and multi-agent workflows, while the orchestrator context stays lean (pairs with /slim). Invoking /bulk is the user's explicit opt-in to Workflow/ultracode-style orchestration for this session. Use when the user types /bulk, asks for "爆速", "並列で大量に", "ultracode", "多エージェント", or hands over a big task where wall-clock speed matters more than token cost.
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Provides expert knowledge of Spring Boot conventions, Kotlin idioms, and MVC patterns for backend API development.
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Python development best practices: clean code, patterns, type hints, decorators, context managers, and architecture. Trigger: When writing Python code anywhere in the project.
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Understand how a confirmed vulnerability in an owned system is triggered so you can patch and test it. This is not exploit development for offense. No payloads, malware, or attack procedures.
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Use when building PHP applications with modern PHP 8.3+ features, Laravel, or Symfony frameworks. Invokes strict typing, PHPStan level 9, async patterns with Swoole, and PSR standards. Creates controllers, configures middleware, generates migrations, writes PHPUnit/Pest tests, defines typed DTOs and value objects, sets up dependency injection, and scaffolds REST/GraphQL APIs. Use when working with Eloquent, Doctrine, Composer, Psalm, ReactPHP, or any PHP API development.
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コードベースやインフラ構成（IaC・CI 定義）のセキュリティリスクを、サービスの特性（個人情報・売上直結・企業機密・金融・情報発信・基盤・人命・ゲーム）に応じた優先順位で洗い出したいときに使う。「セキュリティリスクを報告して」「セキュリティ監査」「service-profile を確認して」「守るべきものを整理して」などの依頼時。コードや設定は変更しない。
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週ごとに Notion「ナレッジカード」DB に集まったカードを読み、問いをまたいで親和図にまとめ、正（worked）と反（failed）の対立から合（提案）を出し、次の問いを決めて、「合成テーマ」DB と週の行の配下の「まとめ」ページに書き込む。「今週のカードを合成して」「W43 のまとめを作って」「ナレッジカードの合成」などの依頼で使う。カードの提出は knowledge-cards、個人の採点は evaluate-session の領域。個人別の件数ランキングや「誰が何を失敗した」は出さない。
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Claude Code のセッション記録（~/.claude の履歴・セッションログ・memory）から、週ごとの問い（questions.json）に答える「ナレッジカード」を下書きし、本人が確認・修正したうえで機密スキャンを通し、Notion の「ナレッジカード」DB に提出する。引数なしなら先週（月曜〜日曜）の記録を集計し、確認のうえ Notion に提出する。「Claude Code の履歴をナレッジカードにまとめて」「先週のログからナレッジカードを作って」「ナレッジカードを提出したい」「今週のカードを出して」「週次の振り返りカードを作って」などの依頼で使う。週次のカード提出であり、個人の採点や評価ではない（セッション 1 本の採点は evaluate-session の領域）。
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Compare gene co-expression and regulatory networks between biological conditions to find rewired relationships using DiffCorr, DiffCoEx, DINGO/iDINGO, and CoDiNA. Covers the differential-connectivity-is-not-differential-expression distinction, the pairwise multiple-testing explosion, marginal vs partial (direct) rewiring, and the underpowered-rewiring failure mode. Use when comparing co-expression networks between disease vs control, treatment, or developmental stages, or finding hub genes that rewire without changing mean expression. For single-condition modules see coexpression-networks; for differential expression of means see differential-expression/de-results.
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Designs and analyzes combinatorial CRISPR screens covering paired-Cas9 (Big Papi, Najm 2018), enhanced AsCas12a multiplex (enCas12a, DeWeirdt 2021), in4mer 4-guide-array Cas12a (Esmaeili Anvar N et al 2024 Nat Commun 15:3577) and the Inzolia paralog-pair library, paralog-buffering detection (Dede 2020 Genome Biol; Thompson 2021 Cell Reports 36:109597), genetic-interaction (GI) scoring as observed_double_LFC minus expected_additive_double_LFC, synthetic-lethal and synthetic-rescue interaction interpretation, the half-of-essentiality buffered by paralogs phenomenon, multiplex screen statistical analysis with MAGeCK MLE interaction terms, and the relationship to single-cell combinatorial Perturb-seq. Use when designing a paralog or pathway-pair screen, choosing between paired-Cas9 (Big Papi) and Cas12a multiplex (Inzolia), interpreting genetic interaction scores, identifying synthetic-lethal targets for drug development, or scaling beyond single-gene CRISPR screens.
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Full-stack Convex development guidelines covering React, Vite, TypeScript, mutations, auth, design system, and documentation practices. Use when building features, writing Convex functions, or making code changes in this project.
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Guide for when to use and when not to use return validators in Convex functions. Use this skill whenever the user is writing Convex queries, mutations, or actions and needs guidance on return value validation. Also trigger when the user asks about Convex type safety, runtime validation, AI-generated Convex code, Convex AI rules, Convex security best practices, or when they're debugging return type issues in Convex functions. Trigger this skill when users mention "validators", "returns", "return type", or "exact types" in the context of Convex development. Also trigger when writing or reviewing Convex AI rules or prompts that instruct LLMs how to write Convex code.
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Reflection-first problem solving methodology for Convex development. Use before implementing any solution to ensure proper root cause analysis, 98% code confidence, and minimal change scope.
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Master Bash Automated Testing System (Bats) for comprehensive shell script testing. Use when writing tests for shell scripts, CI/CD pipelines, or requiring test-driven development of shell utilities.
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Expert patterns for Azure Functions development including isolated worker model, Durable Functions orchestration, cold start optimization, and production patterns. Covers .NET, Python, and Node.js programming models.
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