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Connect static analysis results and human audit notes to a Trailmark code graph. Group findings by severity and compare them with input flow, impact, and privilege boundaries to prioritize investigation and understand findings in their code context.
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Create resumes, reports, papers, and other documents with LaTeX, a document typesetting system, then produce PDFs and page previews. Also convert document formats and handle PDF tasks such as merging files and filling forms.
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Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.
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Build and query Kusto graphs from natural language. Covers transient graphs (make-graph), persistent graph models/snapshots, pattern matching (graph-match), shortest paths, connected components, and graph-to-table export. Generates the edges-first thinking: define edges, define node lookups, union, make-graph. WHEN: make-graph, graph-match, graph-shortest-paths, graph-to-table, graph-mark-components, persistent graph, graph model, graph snapshot, build a graph from data, find paths between nodes, pattern matching in graph, connected components, transient graph, Kusto graph, KQL graph.
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Build and query Kusto graphs from natural language. Covers transient graphs (make-graph), persistent graph models/snapshots, pattern matching (graph-match), shortest paths, connected components, and graph-to-table export. Generates the edges-first thinking: define edges, define node lookups, union, make-graph. WHEN: make-graph, graph-match, graph-shortest-paths, graph-to-table, graph-mark-components, persistent graph, graph model, graph snapshot, build a graph from data, find paths between nodes, pattern matching in graph, connected components, transient graph, Kusto graph, KQL graph.
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Lay out and organize a ComfyUI workflow cleanly on the live panel canvas. Dependency-layered node placement with no overlaps, subgraphs, colored group boxes, and subgraph rail alignment. Use when asked to tidy / clean up / organize / arrange a workflow, add groups or subgraphs, fix overlapping nodes, or build a workflow that should look good from the start.
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Universal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover letters, invoices, academic papers, theses/dissertations, academic CVs, presentations (Beamer), scientific posters, formal letters, exams/quizzes, books, cheat sheets, reference cards, exam formula sheets, fillable PDF forms (hyperref form fields), conditional content (etoolbox toggles), mail merge from CSV/JSON (Jinja2 templates), version diffing (latexdiff), charts (pgfplots + matplotlib), tables (booktabs + CSV import), images (TikZ), Mermaid diagrams, AI-generated images, watermarks, landscape pages, bibliography/citations (BibTeX/biblatex), multi-language/CJK (auto XeLaTeX), algorithms/pseudocode, colored boxes (tcolorbox), SI units (siunitx), Pandoc format conversion (Markdown/DOCX/HTML ↔ LaTeX), and PDF-to-LaTeX conversion of handwritten or printed documents (math, business, legal, general). Compile script supports pdflatex, xelatex, lualatex with auto-detection, latexmk backend, texfot log filtering, PDF/A output, and verbosity control (--verbose/--quiet). Empirically optimized scaling: single agent 1-10 pages, split 11-20, batch-7 pipeline 21+. Use when user asks to: (1) create a resume/CV/cover letter, (2) write a LaTeX document, (3) create PDF with tables/charts/images, (4) compile a .tex file, (5) make a report/invoice/presentation, (6) anything involving LaTeX or pdflatex, (7) convert/OCR a PDF to LaTeX, (8) convert handwritten notes, (9) create charts/graphs/diagrams, (10) create slides, (11) write a thesis or dissertation, (12) create an academic CV, (13) create a poster, (14) create an exam/quiz, (15) create a book, (16) convert between document formats (Markdown, DOCX, HTML to/from LaTeX), (17) generate Mermaid diagrams for LaTeX, (18) create a formal business letter, (19) create a cheat sheet or reference card, (20) create an exam formula sheet or crib sheet, (21) condense lecture notes/PDFs into a cheat sheet, (22) create a fillable PDF form with text fields/checkboxes/dropdowns, (23) create a document with conditional content/toggles (show/hide sections), (24) generate batch/mail-merge documents from CSV/JSON data, (25) create a version diff PDF (latexdiff) highlighting changes between documents, (26) create a homework or assignment submission with problems and solutions, (27) create a lab report with data tables, graphs, and error analysis, (28) encrypt or password-protect a PDF, (29) merge multiple PDFs into one, (30) optimize/compress a PDF for web or email, (31) lint or check a LaTeX document for common issues, (32) count words in a LaTeX document, (33) analyze document statistics (figures, tables, citations), (34) fetch BibTeX from a DOI, (35) convert a Graphviz .dot file to PDF/PNG, (36) convert a PlantUML .puml file to PDF/PNG, (37) create a one-pager/fact sheet/executive summary, (38) create a datasheet or product specification sheet, (39) extract pages from a PDF (page ranges, odd/even), (40) check LaTeX package availability before compiling, (41) analyze citations and cross-reference with .bib files, (42) debug LaTeX compilation errors, (43) make a document accessible (PDF/A, tagged PDF), (44) create lecture notes or course handouts, (45) fill an existing PDF form (fillable fields or non-fillable with annotations), (46) extract text or tables from a PDF (pdfplumber, pypdf), (47) OCR a scanned PDF to text (pytesseract), (48) create a PDF programmatically with reportlab (Canvas, Platypus), (49) rotate or crop PDF pages (pypdf), (50) add a watermark to an existing PDF, (51) extract metadata from a PDF (title, author, subject).
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Use DIG (Dive into Graphs) to load graph-learning datasets, run graph generation, self-supervised learning, GNN explainability, 3D graph learning, GOOD OOD datasets, graph augmentation, fair graph learning, and large-scale graph workflows.
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generate, refine, validate, and render diagrams from natural language, notes, code snippets, schemas, tables, or existing diagram source. use for flowcharts, swimlanes, sequence diagrams, state diagrams, er diagrams, class diagrams, architecture/c4-style diagrams, dependency graphs, gantt charts, mind maps, user journeys, sankey-style flows, org charts, network graphs, and other visual models. supports mermaid by default, graphviz dot for complex graph layout, plantuml for uml-heavy engineering diagrams, and svg output when direct markup is more reliable.
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Builds per-repo code graphs in JSON and markdown-ready derived artifacts. Use when you need blast radius, symbol-level maps, import graphs, inheritance, or test links.
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Implements stateful agent graphs using LangGraph. Use when building graphs, adding nodes/edges, defining state schemas, implementing checkpointing, handling interrupts, or creating multi-agent systems with LangGraph.
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Design, build, evaluate, or teach graph-based systems. Use for knowledge graphs, ontology/schema design, entity/relation/event extraction, entity resolution and fusion, GraphRAG or graph memory, and agent/task dependency graphs with concurrency, joins, failure handling, verification, or human gates.
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Use for architecture review, dependency graphs, coupling analysis, or circular dependency detection. Establishes project module namespaces and traces imports plus Claude plugin hook, skill, script, PEP 723, and MCP boundaries. Emits partitioned Mermaid graphs with cycle, coupling, and ownership signals; verifies contract and consequence before assigning severity. Registers diagrams as codebase-analysis artifacts.
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generate, refine, validate, and render diagrams from natural language, notes, code snippets, schemas, tables, or existing diagram source. use for flowcharts, swimlanes, sequence diagrams, state diagrams, er diagrams, class diagrams, architecture/c4-style diagrams, dependency graphs, gantt charts, mind maps, user journeys, sankey-style flows, org charts, network graphs, and other visual models. supports mermaid by default, graphviz dot for complex graph layout, plantuml for uml-heavy engineering diagrams, and svg output when direct markup is more reliable.
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Entity and relation tracking skill using MCP memory server patterns and local knowledge graph storage. Build persistent knowledge graphs of entities, relationships, and observations across agent sessions. Covers the MCP memory server (@modelcontextprotocol/server-memory), local JSON-based graphs, and entity-relation querying patterns for long-running agents.
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Analyze a repository's type system and generate type-safe DAG execution pipelines with GraphSentry-style certificate verification. This skill should be used when building LLM-driven workflows that need deterministic type safety, when composing typed operations into validated execution graphs, or when adding contract-checked pipeline orchestration to any codebase. Supports Python (Pydantic) and TypeScript (Zod).
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Fix GraphSnapshot tests blocking CI on every feature PR. Use when: (1) every PR fails CI with "Snapshot mismatch" despite correct behavior, (2) fixing snapshots requires build → regen → commit → wait CI cycle per PR, (3) snapshot test in test/unit/*.test.js glob breaks on any intentional change, (4) pre-push hook runs pnpm build + snapshots:update on every push (2-3min overhead). Solution: move GraphSnapshot.test.js to test/unit/snapshots/ so it's excluded from the *.test.js glob. Run manually via pnpm snapshots:update when needed.
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Representations for hierarchical skill structures including knowledge graphs and ontological decomposition
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Apply practical DAG decomposition, transitive-edge reduction, and reachability indexing to dense dependency graphs. Use when low width and repeated queries justify preprocessing. NOT for cyclic graphs, one-off graph checks, or exact-minimum-chain requirements.
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Decompose DAGs into execution chains using width bounds, stratification, virtual nodes, and matching. Use when minimizing workflow lanes in dependency graphs. NOT for cyclic graphs, generic scheduling, or one-off queries with no preprocessing payoff.
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Expert-level data structures covering arrays, linked lists, trees, heaps, hash tables, graphs, and advanced structures like segment trees, tries, and union-find.
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Expert-level graph theory knowledge. Use when working with graph algorithms, network flows, matching, graph coloring, planar graphs, spectral graph theory, random graphs, or graph applications in computer science and networks. Also use when the user mentions 'shortest path', 'minimum spanning tree', 'network flow', 'bipartite matching', 'graph coloring', 'clique', 'independent set', 'vertex cover', 'planarity', 'graph isomorphism', 'adjacency matrix', or 'Laplacian'.
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Load this skill whenever the project contains charts, graphs, data visualizations, infographics, or any visual representation of data (bar charts, line charts, pie charts, scatter plots, dashboards). Under no circumstances render a chart without a text alternative, data table, or summary. Prioritize conveying the same information through non-visual means.
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Algorithms specialist v2 — Big-O, dynamic programming, graphs, sorting, competitive programming
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