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Build a reproducible Stata analysis from data cleaning through modeling, diagnostic checks, and robustness tests. Generate runnable .do files, regression tables, and figures for empirical papers, with additional workflows for epidemiology and machine learning approaches to causal inference.

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• Building a reproducible Stata analysis pipeline
• Comparing regression specifications in a paper table
• Checking causal estimates with robustness tests

Run linear or logistic regression on CSV or Excel tables to examine relationships between variables. Get coefficients, measures of model fit, significance tests, and checks for overlapping predictors, with explanations in plain language.

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• Examining relationships between sales and numeric factors
• Analyzing factors associated with customer churn
• Checking coefficient significance and model fit

Infers person-to-person transmission from pathogen genomes using outbreaker2, TransPhylo, phybreak, BadTrIP, SCOTTI, BEASTLIER, and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12 SNPs; MRSA <=15; C. difficile <=2; Klebsiella <=21), models within-host diversity and transmission bottlenecks, integrates contact-tracing data, distinguishes generation from serial interval, and attributes source via Bayesian source attribution (islandR). Use when investigating outbreaks for who-infected-whom, defining SNP-cluster outbreak definitions, accounting for unsampled intermediates, choosing between outbreaker2 (rich epi data) and TransPhylo (genomic-only after a dated phylogeny), running source attribution between host populations, calling HIV-TRACE thresholds appropriate to the local subtype, or distinguishing recent transmission from reactivation in TB or chronic HIV.

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Port MATLAB Data Acquisition Toolbox code from the discouraged (legacy) session-based interface (daq.createSession, addAnalogInputChannel, startBackground, DataAvailable listeners, queueOutputData, wait) to the recommended DataAcquisition interface (daq("ni"), addinput, start, ScansAvailableFcn, write, preload). Use when migrating legacy DAQ scripts, converting session-API calls, working with DataAcquisition objects, writing multi-feature DAQ scripts that combine triggers, callbacks, continuous acquisition, or analog output. Also use when a user says their DAQ script "used to work" or "errors on R20XX", since modernizing legacy session-API code is a frequent fix for those failures. Trigger keywords: daq, DAQ, NI, session interface, addtrigger, addclock, ScansAvailableFcn, ScansRequiredFcn, daq.createSession, addAnalogInputChannel, startBackground, queueOutputData, DataAvailable, evt.Data, evt.TimeStamps, wait(d), preload, discouraged, legacy, modernize, R2020a.

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Find and query PI assets using MATLAB's Industrial Communication Toolbox. Two paths: (1) direct PI tag lookup via piclient + tags when user provides a tag name or description (R2022a+), (2) Asset Framework navigation via afclient when user needs element/attribute hierarchy (R2026a+). Use when working with PI AF servers, PI Data Archive tags, asset hierarchies, element templates, attribute lookup, or historical data from OSIsoft PI systems.

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Upgrade C, C++, and Fortran MEX source files from the Separate Complex (SC) API to the Interleaved Complex (IC) API. Use when converting mxGetPr/mxGetPi to mxGetComplexDoubles, migrating MEX files to -R2018a, adding MX_HAS_INTERLEAVED_COMPLEX guards for SC/IC guarded builds, or modernizing legacy MEX code that uses mxGetData/mxSetData/mxGetImagData/mxSetImagData. Covers C (.c), C++ (.cpp, .cxx), and Fortran (.F, .f90) MEX functions. Triggers on: interleaved complex, IC MEX, mex upgrade, mex migration, separate complex, mxGetPi, mxGetPr replacement, -R2018a, complex MEX, Fortran MEX, .F MEX file, C++ MEX, .cpp MEX file, MEX performance, MEX slow complex, MEX call overhead, improve MEX performance complex.

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Manage Cloudflare R2 buckets, lifecycle, and signed URLs. Use for low-egress object storage and media delivery.

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Hit the Cloudflare REST API directly for operations that wrangler and MCP can't handle well. Bulk DNS, custom hostnames, email routing, cache purge, WAF rules, redirect rules, zone settings, Worker routes, D1 cross-database queries, R2 bulk operations, KV bulk read/write, Vectorize queries, Queues, and fleet-wide resource audits. Produces curl commands or scripts. Triggers: 'cloudflare api', 'bulk dns', 'custom hostname', 'email routing', 'cache purge', 'waf rule', 'd1 query', 'r2 bucket', 'kv bulk', 'vectorize query', 'audit resources', 'fleet operation'.

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Upscale and restore video in ComfyUI. Both the quick local path (per-frame ESRGAN like 4x_foolhardy_Remacri via ImageUpscaleWithModel + 4x→2x supersample, with its temporal-flicker tradeoff) and temporal-aware super-resolution (SeedVR2, the newer FlashVSR) with the downscale-first restore pipeline; RIFE/FILM frame interpolation via the BUILT-IN ComfyUI 0.26 FrameInterpolate (rife_v4.26 in models/frame_interpolation/) or the ComfyUI-Frame-Interpolation pack; 2x/4x scaling, VRAM tiers, VHS encode. Captures the classic downscale→SeedVR2→RIFE recipe and the current 2026 recommendation.

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Use when reverse engineering tools are missing, not working, or need configuration. Installation guides for radare2 (r2), Ghidra, GDB, QEMU, Frida, binutils, and cross-compilation toolchains. Keywords - "install radare2", "setup ghidra", "r2 not found", "qemu missing", "tool not installed", "configure gdb", "cross-compiler"

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Use when analyzing binary structure, disassembling code, or decompiling functions. Deep static analysis via radare2 (r2) and Ghidra headless - function enumeration, cross-references (xrefs), decompilation, control flow graphs. Keywords - "disassemble", "decompile", "what does this function do", "find functions", "analyze code", "r2", "ghidra", "pdg", "afl"

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Comprehensive Cloudflare account management for deploying Workers, KV Storage, R2, Pages, DNS, and Routes. Use when deploying cloudflare services, managing worker containers, configuring KV/R2 storage, or setting up DNS/routing. Requires CLOUDFLARE_API_KEY in .env and Bun runtime with dependencies installed.

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Comprehensive Cloudflare account management for deploying Workers, KV Storage, R2, Pages, DNS, and Routes. Use when deploying cloudflare services, managing worker containers, configuring KV/R2 storage, or setting up DNS/routing. Requires CLOUDFLARE_API_KEY in .env and Bun runtime with dependencies installed.

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Think and work like an expert Molecular Pathologist. Use when a task calls for Molecular Pathologist judgment. Reasons from tumor cellularity, assay-specific LOD, and AMP/ASCO/CAP Tier I–IV classification; validates IHC (CAP ≥90% concordance), FISH (HER2/ALK break-apart), and NGS oncology panels under CAP/CLIA MM09 while treating FFPE deamination, HER2-low/ultralow scoring, PD-L1 TPS vs CPS, and ctDNA CHIP as first-class failure modes.

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Expert in Ethereum L2 solutions - Optimism, Arbitrum, zkSync, Base, and rollup architecture for scalable dApp developmentUse when "layer 2, l2, optimism, arbitrum, zksync, base, rollup, op stack, scaling, layer2, optimism, arbitrum, zksync, base, rollup, scaling, ethereum" mentioned.

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Expert guide for Cloudflare Workers ecosystem — Workers, D1 (SQLite at edge), KV, R2 (S3-compatible storage), Queues, Durable Objects, Hyperdrive, and Workers AI / Panduan ahli ekosistem Cloudflare Workers — Workers, D1, KV, R2, Queues, Durable Objects, Hyperdrive, dan Workers AI.

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Expert guide for file uploads (S3, R2, Supabase Storage), presigned URLs, image/video processing, CDN optimization, and media pipeline architecture / Panduan ahli untuk upload file (S3, R2, Supabase Storage), presigned URL, pemrosesan gambar/video, optimasi CDN, dan arsitektur pipeline media.

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Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), RNAi DEMETER2 scores, PRISM compound sensitivity, and gene effect profiles across the cell-line panel. Use for identifying cancer-selective vulnerabilities, separating pan-essential genes from selective ones, finding synthetic lethal interactions, correlating dependency with mutation, expression and copy number, and validating oncology drug targets. Also trigger on DepMap, Chronos gene effect, CRISPRGeneEffect.csv, DEMETER2, PRISM repurposing, co-essentiality, pan-essential, or ACH- cell line identifiers.

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Cloudflare Workers edge computing — Durable Objects, KV, R2, D1, Workers AI, AI Gateway

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Cloudflare platform management via Wrangler CLI, Agents SDK (v0.13+), and Browser Rendering API. Deploy Pages, Workers, KV, R2, D1, Queues, Vectorize, Workflows, Hyperdrive. Build stateful AI agents with the full SDK stack — Agent, AIChatAgent, Think, Voice, sub-agents, fibers, HITL, scheduling, observability, Code Mode (Dynamic Worker sandboxes). Budget web scraping via cf_browser.py. Use when deploying to Cloudflare, managing CF infrastructure, configuring wrangler.toml/wrangler.jsonc, building AI agents or chat agents on Workers, adding voice, orchestrating sub-agents, or for cheap web scraping. Triggers: Cloudflare, wrangler, Pages, KV, R2, D1, Workers, Vectorize, Queues, Workflows, Hyperdrive, cf_browser, Browser Rendering, Agents SDK, Code Mode, codemode, MCP, Think, AIChatAgent, Voice agent, sub-agents, fibers, HITL, Dynamic Workers.

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Analyzes research papers (PDF/arXiv URL) and converts them into executable code. Automatically activated upon requests for paper replication, algorithm implementation, or research reproduction. Responds to requests like "Implement this paper", "paper2code", "Convert paper to code".

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Reverse engineers binaries using radare2/rizin interactively, covering analysis initialization, navigation, disassembly and graph views, patching, and the visual mode workflow. Activates for requests to reverse a binary with radare2 or rizin, learn r2 commands, or navigate and disassemble a sample in r2.

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Use when wrangler deploys silently fail or produce wrong artifacts, secrets upload as empty strings, custom domain DNS is not resolving, route assignment broke after rename, observability/tail logs are needed, D1/KV/R2 bindings are missing, OAuth scope errors block a command, cookies on a redirect are not attaching, or the worker exceeds CPU time. Triggers: "Tenant or user not found", "Authentication error" on wrangler d1 push, secret length is 0 after upload, route returns origin not worker, "compatibility_date too old", 1101 errors, custom_domain assignment lost on script rename. NOT for AWS Lambda / Vercel Edge / Deno Deploy (different runtimes), Cloudflare Zero Trust, or R2-specific tuning.

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Infers person-to-person transmission from pathogen genomes using outbreaker2, TransPhylo, phybreak, BadTrIP, SCOTTI, BEASTLIER, and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12 SNPs; MRSA <=15; C. difficile <=2; Klebsiella <=21), models within-host diversity and transmission bottlenecks, integrates contact-tracing data, distinguishes generation from serial interval, and attributes source via Bayesian source attribution (islandR). Use when investigating outbreaks for who-infected-whom, defining SNP-cluster outbreak definitions, accounting for unsampled intermediates, choosing between outbreaker2 (rich epi data) and TransPhylo (genomic-only after a dated phylogeny), running source attribution between host populations, calling HIV-TRACE thresholds appropriate to the local subtype, or distinguishing recent transmission from reactivation in TB or chronic HIV.

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