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Python-based workflow manager for reproducible, scalable pipelines. Define rules with file-based dependencies; Snakemake resolves execution order and parallelism. Runs local, SLURM, LSF, AWS, GCP via profiles; per-rule conda/Singularity envs. For NGS pipelines, ML training, and multi-step file processing. Use Nextflow for Groovy dataflow or nf-core integration.
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Medical image segmentation with nnU-Net's self-configuring framework — auto-selects architecture, preprocessing, training for any modality. CT, MRI, microscopy, ultrasound in 2D, 3D full-res, 3D low-res, cascade. Pipeline: convert → plan/preprocess → train (5-fold CV) → best config → predict → ensemble. Use when classical segmentation fails and annotated data exists.
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Provides chunking strategies for RAG systems. Generates chunk size recommendations (256-1024 tokens), overlap percentages (10-20%), and semantic boundary detection methods. Validates semantic coherence and evaluates retrieval precision/recall metrics. Use when building retrieval-augmented generation systems, vector databases, or processing large documents.
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Excel/spreadsheet processing for construction: estimates, schedules, tracking logs, quantity takeoffs. Formulas, formatting, analysis.
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Reusable prompt templates for construction AI tasks: cost estimation, schedule analysis, document processing, BIM queries. Structured prompts for consistent results.
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Generate images and visualizations from Revit/IFC files without BIM software. Python-based noBIM tool for batch processing.
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Routes EEG, ECoG, MEG, and related electrophysiology deep-learning workflows through the braindecode Python package, including dataset construction, preprocessing, model training, augmentation, and interpretation.
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Use when making retried HTTP commands or message processing safe against duplicate effects, including database-backed request keys, payload conflicts and concurrent retries. Do not apply caching as a substitute for business idempotency.
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Guides the Privacy Threshold Analysis screening process to determine whether a full DPIA is required. Provides a quick-screen questionnaire, threshold criteria based on WP248rev.01, escalation triggers, and documentation requirements. Activate when evaluating new processing activities, system changes, or procurement decisions. Keywords: PTA, privacy threshold analysis, DPIA screening, quick-screen, threshold criteria, WP248, escalation triggers.
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Audits Records of Processing Activities against supervisory authority templates from CNIL, ICO, and BfDI. Provides completeness scoring, gap identification, and remediation tracking. Activate for RoPA audit, completeness check, supervisory authority readiness, CNIL template, ICO template, BfDI template, gap analysis.
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Guide for managing consent for scientific research under GDPR Article 89 and Recital 33 broad consent provisions. Covers ethical review board coordination, purpose evolution management, appropriate safeguards including pseudonymization, and the interplay between consent and other lawful bases for research processing.
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Manages the absolute right to object to direct marketing under GDPR Article 21(2)-(3), covering immediate cessation of all direct marketing processing, suppression list management, cross-channel enforcement, and profiling for marketing purposes. Activate for marketing opt-out, unsubscribe, Art. 21(2), direct marketing objection queries.
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Manages RoPA for complex multi-entity corporate groups including entity-level versus group-level records, intra-group transfer documentation, and shared processing coordination. Activate for group RoPA, multi-entity, corporate group, intra-group transfers, subsidiary records, holding company.
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Decision framework for choosing between consent and legitimate interest as the lawful basis for processing. Covers power imbalance indicators, conditionality prohibition under Article 7(4), granularity requirements, the three-part LIA test (purpose, necessity, balancing), and practical decision trees for common scenarios.
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Guides DPIA for marketing profiling, behavioural targeting, cross-device tracking, and advertising analytics. Covers ePrivacy Directive Art. 5(3) cookie consent, PECR regulations, legitimate interest balancing for direct marketing, and adtech processing chain assessment. Keywords: marketing analytics, DPIA, profiling, behavioural targeting, cross-device tracking, ePrivacy, PECR, adtech, legitimate interest.
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Compares PIA/DPIA methodologies: CNIL PIA tool, ICO DPIA template, NIST Privacy Framework, and ISO 29134. Provides methodology selection criteria based on regulatory jurisdiction, organisation maturity, processing complexity, and resource availability. Covers regulatory acceptance, tool features, and cross-methodology mapping. Keywords: PIA methodology, CNIL, ICO, NIST Privacy Framework, ISO 29134, DPIA comparison, assessment.
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Implementation guide for GDPR Article 7(3) consent withdrawal mechanisms. Covers the equal ease requirement ensuring withdrawal is as easy as giving consent, one-click withdrawal implementation, cascading effects on downstream processing, third-party notification workflows, and technical architecture for real-time consent revocation.
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California consumer privacy rights workflow implementation under CCPA/CPRA. Covers right to know, delete, opt-out of sale/sharing, correct, and limit sensitive PI processing. Includes 45-day response timelines, identity verification procedures, and authorized agent handling.
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Systematic application of the eight privacy design patterns per Hoepman: minimize, hide, separate, abstract, inform, control, enforce, and demonstrate. Covers pattern selection methodology per processing activity, mapping to GDPR principles, and practical implementation guidance for privacy-by-design system architecture.
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Select appropriate Ollama models for processing sensitive but legal content. Use when: (1) llama3.2 or deepseek-r1 refuses to process content with "I cannot assist" responses, (2) Local LLM returns generic safety disclaimers instead of following instructions, (3) Need to process adult content, sex work data, or other legal-but-sensitive material through a local LLM. Also covers using /api/chat vs /api/generate for system prompt support, and structuring prompts for consistent format compliance.
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Fix psycopg2 "could not receive data from server: Operation timed out" or "connection already closed" errors when using Cloud SQL with long-running Python scripts. Use when: (1) psycopg2.OperationalError after a period of no DB activity, (2) DB connection works initially but fails after a non-DB phase (API calls, file processing, CDX scans), (3) Cloud SQL managed PostgreSQL kills idle connections. The fix is to defer DB connection opening until needed, or add reconnection logic for long-running batch processes.
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Production-grade Python and AI engineering standards. Use for ANY Python work — FastAPI services, LangChain/LangGraph agents, RAG pipelines, LLM API integrations, document processing, or data scripts — whether writing new code, reviewing, refactoring, or debugging. Enforces typed Pydantic boundaries, structured errors and logging, LLM call timeouts/retries/output validation, secret management, async correctness, and tested code.
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Inspect, extract, OCR, create, merge, split, reorder, rotate, annotate, fill, redact, compress, secure, and verify PDF documents while preserving source files and visual fidelity. Use when working with one or more .pdf files; converting documents to or from PDF; extracting text, tables, images, metadata, forms, or page ranges; applying true redactions or signatures; diagnosing malformed, encrypted, scanned, or inaccessible PDFs; or validating that a PDF transformation preserved the intended content and layout.
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Train machine learning models end-to-end, covering data loading, preprocessing, architecture selection, training loops, validation, and checkpointing. Use when the user requests model training or provides relevant inputs for this workflow.
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