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Refactor existing code through analysis, planning, implementation, review, and testing. Use small, verifiable changes to extract modules, reorganize code, or improve architecture while preserving existing behavior and checking for regressions.
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Use Ontoly's deterministic Software Graph and MCP server for codebase architecture, request tracing, dependency analysis, and impact analysis.
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Have a fast, conversational analysis with the AWS DevOps Agent. Use for cost optimization, architecture review, topology mapping, knowledge / runbook discovery, security audits, dependency questions, and quick diagnostics — anything that needs a 5-30 second answer rather than a 5-8 minute deep investigation. Trigger words include cost, optimize, review, architecture, topology, what runbooks, show me, compare, audit, what if.
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Detect business logic vulnerabilities in a codebase using a three-phase approach: threat modeling (domain analysis and attack scenarios), batched verify (check exploitable gaps in parallel subagents, 3 scenarios each), and merge (consolidate batch results). Covers price manipulation, workflow bypass, limit violations, race conditions, reward abuse, etc. Requires sast/architecture.md (run sast-analysis first). Outputs findings to sast/businesslogic-results.md. Use when asked to find business logic, logic flaws, or abuse-of-function bugs.
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Analyzes single-cell pooled CRISPR screens (Perturb-seq, CROP-seq, Perturb-CITE-seq, ECCITE-seq, multiome) where each cell carries an sgRNA and a scRNA-seq / surface-protein / chromatin readout. Covers experimental design (direct-capture Perturb-seq Dixit 2016 vs CROP-seq 3'UTR-barcoded Datlinger 2017 vs ECCITE-seq vs Multiome), MOI for sgRNA assignment, escaper-cell filtering (Mixscape, Papalexi 2021), SCEPTRE NB GLM + permutation for low-MOI (Barry 2024 Genome Biol 25:124), the Pertpy framework, factor decomposition, genome-scale Perturb-seq (Replogle 2022 Cell, 2.5M cells), and per-perturbation single-cell DE. Use when running a single-cell CRISPR screen, choosing direct-capture vs CROP-seq architecture, filtering escaper cells, performing single-cell DE, integrating Perturb-seq with pathway analysis, scaling to GW CRISPRi via Replogle protocol, or analyzing multi-omics screens.
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Reads, validates, and prepares CDISC SDTM and ADaM clinical trial data for analysis. Covers SDTM domain joins (DM, AE, EX, VS, LB, DS), ADaM architecture (ADSL, BDS, OCCDS, ADTTE) with traceability, treatment-emergent AE conventions, baseline derivation, SUPPQUAL/NSV handling, Define-XML 2.1, and Pinnacle 21 / CORE validation. Use when working with clinical trial datasets in CDISC SDTM/ADaM format, preparing analysis-ready data, or validating for regulatory submission.
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Fullstack development toolkit with project scaffolding for Next.js/FastAPI/MERN/Django stacks and code quality analysis. Use when scaffolding new projects, analyzing codebase quality, or implementing fullstack architecture patterns.
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Advanced architecture stress analysis methodology for designing systems that survive unknown stresses. Load when --residuality flag is used or when designing high-uncertainty, mission-critical systems.
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Codebase'i knowledge graph olarak analiz et. Dependency, call graph, hotspot analizi.
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Use when you need to add or evaluate Maven dependencies that improve code quality or domain modeling — including nullness annotations (JSpecify), static analysis (Error Prone + NullAway), functional programming (VAVR), architecture testing (ArchUnit), or money and currency support (JavaMoney) — and want a consultative, question-driven approach that adds only what you actually need. This should trigger for requests such as Add Maven dependencies; Add JSpecify nullness dependencies; Add Error Prone NullAway dependencies; Add VAVR functional dependencies; Add ArchUnit architecture testing dependencies; Add JavaMoney dependencies. Part of Plinth Toolkit
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Use when first encountering an unknown binary, ELF file, executable, or firmware blob. Fast fingerprinting via rabin2 - architecture detection (ARM, x86, MIPS), ABI identification, dependency mapping, string extraction. Keywords - "what is this binary", "identify architecture", "check file type", "rabin2", "file analysis", "quick scan"
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Research and advise on the best way to approach a software project, including architecture, tech stack, implementation strategy, pricing/operating-cost tradeoffs, benchmark research, and comparisons with similar real-world projects. Use before building, mid-build, or after completion when the user asks for project strategy, optimal approach, research comparables, similar projects, stack selection, vendor/service choice, repo analysis, architecture critique, implementation feedback, or a prioritized improvement plan. Avoid for narrow single-bug debugging or isolated file edits unless the user asks for broader project direction.
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Researches an open-ended question — options, possible solutions, prior art, trade-offs, or how something works — and produces a durable, evidence-backed, adversarially-validated report that recommends an option without committing the team to any artifact. Use when you want to research approaches, weigh options, survey prior art or the state of the art, or understand how something works before committing to a direction. Does not diagnose a bug, failure, or root cause — use investigate. Does not specify a feature — use plan-a-feature. Does not create or update a coding standard — use coding-standard. Does not compare two concrete artifacts for gaps — use gap-analysis. Does not assess an existing module's architecture — use architectural-analysis. Does not capture feedback on Han's own skills — use han-feedback.
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Architectural decision-making framework. Requirements analysis, trade-off evaluation, ADR documentation. Use when making architecture decisions or analyzing system design.
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Architecture guide for GDPR-compliant federated learning systems. Covers horizontal and vertical FL, aggregation strategies (FedAvg, FedProx), communication efficiency, secure aggregation, and differential privacy integration. Includes privacy guarantees analysis and deployment patterns for cross-organizational ML without data sharing.
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Generate a self-contained, beautifully styled HTML analysis of an academic paper. Use when the user provides an arXiv link, paper URL, PDF, or asks to analyze a research paper. Produces a standalone HTML file with structured sections (Problem, Translation/Analogy, Architecture, Key Results, Verdict), embedded figures, and responsive design. Trigger words include 读论文, 分析论文, paper analysis, paper review.
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Identifies boundaries between modules or components in software systems through static code analysis and dependency detection. Use when Claude needs to analyze software architecture, identify module boundaries, detect boundary violations, find circular dependencies, or assess component coupling. Supports Python (packages and imports) and Java (packages and dependencies). Trigger when users ask to "identify boundaries", "find component boundaries", "detect boundary violations", "analyze module structure", "check architecture", or "find circular dependencies".
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Reads, validates, and prepares CDISC SDTM and ADaM clinical trial data for analysis. Covers SDTM domain joins (DM, AE, EX, VS, LB, DS), ADaM architecture (ADSL, BDS, OCCDS, ADTTE) with traceability, treatment-emergent AE conventions, baseline derivation, SUPPQUAL/NSV handling, Define-XML 2.1, and Pinnacle 21 / CORE validation. Use when working with clinical trial datasets in CDISC SDTM/ADaM format, preparing analysis-ready data, or validating for regulatory submission.
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This skill should be used when the user asks about "technical decision", "what to use", "A vs B", "comparison analysis", "library selection", "architecture decision", "which one to use", "tradeoffs", "tech selection", "implementation approach", or needs deep analysis for technical decisions. Provides systematic multi-source research and synthesized recommendations.
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SEO, AEO (Answer Engine Optimization), and GEO strategy for search engines and AI visibility. Use when working on "SEO audit," "technical SEO," "on-page SEO," "AI search optimization," "AEO," "GEO," "AI visibility," "optimize for ChatGPT," "optimize for Perplexity," "AI Overviews," "answer engine optimization," "generative engine optimization," "AI citations," "featured snippets," "meta tags," "schema markup," "search ranking," "content optimization," "E-E-A-T," "structured data," "search console," "SEO health check," "why am I not ranking," "AI search readiness," "backlink strategy," "link building," "domain authority," "programmatic SEO," "SEO at scale," "template-based SEO," "AEO monitoring," "AI search monitoring," "JSON-LD," "rich snippets," "schema.org," "SERP analysis," "search intent," "site architecture," "information architecture," "URL structure," "internal linking," or "navigation." For keyword research, see keyword-research-and-clustering.
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Semantic code analysis with GitLab Knowledge Graph. Use for go-to-definition, find-usages, impact analysis, architecture visualization. Supports Ruby, Java, Kotlin, Python, TypeScript/JavaScript.
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Botnet architecture taxonomy, detection techniques, and defensive analysis. Covers C2 topologies, DGA analysis, fast-flux detection, P2P overlay mapping, blockchain C2, and ML-based traffic fingerprinting. Defensive research for understanding and countering distributed malicious infrastructure.
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Build and query architecture-aware code search, dependency graphs, call flows, impact analysis, and belief maps for Python, TypeScript, TSX, Rust, C#, Java, Go, Ruby, and Ruby on Rails repositories. Use before non-trivial code changes to find module boundaries, blast radius, architecture violations, and the minimal source files to read.
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Produce a structured codebase analysis report with architecture overview, critical files, patterns, and actionable recommendations.
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