Adds a new ROS 2 message type to CARLA's native ROS 2 interface — the hand-written POD struct under LibCarla/source/carla/ros2/types/msg, its Fast-CDR serialize/deserialize pair, the RIHS01 type hash computed in Docker, the CdrTopicInfo registration and the type-hash test. Use when the user asks to "add a ROS message type", "support sensor_msgs/X in CARLA", "add a carla_msgs type", "why is my type hash warning appearing", or needs a message CARLA does not publish yet. There is no IDL codegen — every step is manual.
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carla-simulator/carla-agentic-tools☆ 42026年9月12日 更新
Reads and summarises ScenarioRunner output — the criteria pass/fail tables from --output/--file, the machine-readable --json and --junit result files, and the criteria JSON written alongside a --record recording — and runs the metrics module (metrics_manager.py) to compute custom measurements over a recorded run offline, without the simulator. Use when the user asks "did the scenario pass", "why did it fail", "summarise these results", "compare these runs", or wants distance/speed/lane metrics from a recording.
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carla-simulator/carla-agentic-tools☆ 42026年9月12日 更新
Reads a CARLA Leaderboard results.json — per-route driving score, route completion, infraction penalty and the infraction lists — explains how the score was computed for that leaderboard version, and rescores an existing result under the other version's rules (2.0 multiplicative vs 2.1 additive) without re-running anything. Also diffs two runs and merges sharded result files. Use when the user asks "what did I score", "why is my score low", "did my agent pass", "why don't my scores match the leaderboard", or hands over a results.json.
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carla-simulator/carla-agentic-tools☆ 42026年9月12日 更新
Vercel リファレンス。Vercel CLI、vercel.json / vercel.ts / vercel.toml、 Vercel Functions(Node.js / Python / Bun / Edge / Fluid Compute / ISR / Middleware)、 @vercel/functions、Vercel Blob、Global Config(旧 Edge Config)、 Marketplace Storage(Neon / Upstash / Supabase)、OIDC、 デプロイメント(Git 連携 / rollback / rolling release)、環境変数、ドメイン、DNS、ログ、キャッシュ、CDN。
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Fandhe-AI/agent-reference-skills☆ 42026年10月20日 更新
OpenAI Codex (CLI / IDE / cloud / ChatGPT desktop app) リファレンス。 GPT-6 系, Fast / Ultrafast mode, codex exec, スラッシュコマンド, prompting, AGENTS.md, rules, subagents, approvals, auto-review, sandbox, permission profiles, profiles, config.toml, 環境変数, roles, MCP 設定, GitHub Action, Codex SDK, App Server (JSON-RPC), Agents SDK 連携, Codex skills (.agents/skills), plugins, scheduled tasks, Browser, Computer Use, cloud / local / worktree 環境, git worktrees, Record & Replay, cloud 委譲, GitHub / GitLab / Linear / Slack 連携, administration, provisioning, analytics API, compliance API, LLM gateway, Codex Security 脆弱性スキャン (SARIF), deep scan, triage, findings, threat model, security hardening。
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Fandhe-AI/agent-reference-skills☆ 42026年10月20日 更新
OpenAI API (developers.openai.com) の Agents SDK (Python / TypeScript)・Agents API (beta)。 Agent, Runner, handoffs, guardrails, tracing, SandboxAgent、 client.beta.agents の sessions / environments / vaults / plugins、 built-in tools(web search, file search, computer use, code interpreter, image generation)、 function tools, vector stores, MCP (Model Context Protocol) connectors, background mode, multi-agent orchestration。
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Fandhe-AI/agent-reference-skills☆ 42026年10月20日 更新
Apple オンデバイス機械学習フレームワークリファレンス。 Core AI (.aimodel) / Core ML / Create ML / Vision / Natural Language / Speech / Media Intelligence / Music Understanding。 AIModel, InferenceFunction, MLModel, MLModelConfiguration, MLMultiArray, MLTensor, MLComputeUnits, MLImageClassifier, MLTextClassifier, MLDataTable, VNCoreMLRequest, VNImageRequestHandler, VNRecognizeTextRequest, RecognizeTextRequest, NLTagger, NLEmbedding, NLLanguageRecognizer, SpeechAnalyzer, SpeechTranscriber, SFSpeechRecognizer, SFSpeechAudioBufferRecognitionRequest, SFTranscription, FaceGroupAnalyzer, MusicUnderstandingSession。
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Fandhe-AI/agent-reference-skills☆ 42026年10月20日 更新
Claude API (platform.claude.com) の tool use / Agent Skills / MCP。 tool definition (JSON Schema), tool_use / tool_result, server tools(code execution, web search, web fetch, memory tool, tool search), client toolset(computer use, browser use), Agent Skills (SKILL.md), Skills API GA (/v1/skills), MCP connector, mcp_servers, mcp_tool_listing, MCP tunnels, Tunnels API。
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Fandhe-AI/agent-reference-skills☆ 42026年10月20日 更新
Claude Code (code.claude.com) の各サーフェス(Desktop / IDE / Web / mobile / ターミナル UX)リファレンス。 Desktop app (launch.json, scheduled tasks, WSL, Linux, iOS simulator)、 VS Code / JetBrains / Chrome 拡張 (Claude in Chrome)、 claude.ai/code クラウドセッション (--cloud, --teleport, Projects)、mobile、 interactive mode, fullscreen, /tui, voice dictation, accessibility, computer use, artifacts。
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Fandhe-AI/agent-reference-skills☆ 42026年10月20日 更新
Check, from the employer's side, what has been put in writing before a paid Otameshi Tenshoku assignment starts under gyomu-itaku: item by item whether the deliverable, delivery date, fee and how it is calculated, payment due date, who pays, out-of-scope work, revision limits, company support, rights, confidentiality and termination are stated in a contract, purchase order or email rather than in chat or by word of mouth, count the days from delivery to payment, and find pay tied to satisfaction or hiring, unpaid or unlimited revisions and one-sided termination. Use when a hiring manager, recruiter or small-business owner is about to offer terms to a candidate, has been asked by a candidate what is still unwritten, or needs the conditions written for a platform contract screen; do not use to judge whether the terms are lawful or the fee fair, to compute withholding or consumption tax, for employment contracts, or to sign, send or conclude the contract on the user's behalf.
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ficilcom/otame4-work-skills☆ 42026年9月23日 更新
Capture screenshots on registered computers, record on macOS or HarmonyOS, and manage saved captures. Probe capabilities before recording.
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codewhale-hq/codewhale-cu-plugin☆ 32026年10月16日 更新
Computes and interprets sequencing read depth and coverage over a genome, windows, or target regions with mosdepth (windowed depth, cumulative distribution, --quantize callable BEDs), bedtools genomecov/coverage (bedGraph tracks, per-target stats), samtools depth/coverage (per-base depth, per-contig depth+breadth). Covers the breadth-vs-mean distinction, the cumulative-coverage curve, evenness (CV/Fano/fold-80/Gini), what each tool silently counts (duplicates, secondary/supplementary, MAPQ, read span vs fragment, mate-overlap), the samtools-depth 8000-cap version trap, and the bedtools coverage -a/-b orientation flip. Use when assessing sequencing adequacy, building coverage tracks, computing breadth at a depth threshold, defining callable regions, or QCing target-capture uniformity.
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peacezha/TRACE☆ 32026年10月20日 更新
Balances Hi-C contact matrices (ICE via cooler.balance_cooler, KR/SCALE/VC context), computes distance-decay expected with cooltools (expected_cis per-diagonal P(s), expected_trans scalar), builds observed/expected (O/E) matrices, and diagnoses polymer state from the P(s) log-derivative. Covers the within-matrix-vs-cross-sample distinction (balancing is NOT a normalizer), the equal-visibility assumption that CNV/aneuploidy violates (use raw counts for copy-number), cis-only balancing, mad_max/blacklist masking before balancing, multiplicative cooler weights vs divisive juicer weights, and the resolution-vs-depth budget. Use when balancing a .cool/.mcool, computing expected or P(s), making O/E matrices for compartments/loops, deciding ICE vs KR vs SCALE, choosing a resolution for a given depth, or troubleshooting NaN/all-NaN balanced matrices; route cross-sample comparison to hic-differential.
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peacezha/TRACE☆ 32026年10月20日 更新
Visualises RNA-modification data with transcript-feature metagene plots (Guitar GuitarPlot with 5'UTR / CDS / 3'UTR scaling; MetaPlotR; deepTools `computeMatrix scale-regions`), peak-centred heatmaps (ComplexHeatmap; deepTools plotHeatmap), IP-vs-input paired browser tracks (bigWig of log2 IP/input via deepTools `bamCompare`; ggcoverage; pyGenomeTracks; Gviz; IGV / UCSC track hubs), DRACH sequence-logo plots (ggseqlogo; MEME), 5'UTR / CDS / 3'UTR stacked-bar feature-distribution summaries, and volcano / MA plots for differential modification. Establishes stop-codon enrichment in the metagene plot as the biological QC anchor for any MeRIP dataset (Dominissini 2012 *Nature* 485:201; Meyer 2012 *Cell* 149:1635 — concurrent founding papers from different labs both showed this independently). Use when producing the canonical metagene plot with stop-codon enrichment as a QC anchor, building paired IP/input genome-browser tracks at single-locus resolution, plotting peak-centred heatmaps clustered by condition, summarising peak distribution across transcript features for figure 1, generating DRACH motif logos as sanity checks on the peak set, rendering volcano plots of differential m6A, or reproducing the Dominissini 2012 / Meyer 2012 stop-codon enrichment plot.
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peacezha/TRACE☆ 32026年10月20日 更新
Defines cell populations in flow and spectral cytometry through manual gates (rectangle, polygon, quadrant, boolean) and reproducible automated gating (openCyto gating templates, flowDensity data-driven thresholds, flowClust model-based gates), organized as a hierarchical GatingSet (flowWorkspace) and round-tripped with FlowJo via CytoML. Covers the canonical gate order (time -> debris -> singlets -> live -> lineage), FMO-vs-isotype boundary setting, gate-order dependence and recompute semantics, rare-event/MRD gating, and per-population statistics. Use when building a gating strategy, automating a manual FlowJo scheme across samples, choosing manual vs data-driven gates, or extracting population frequencies.
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peacezha/TRACE☆ 32026年10月20日 更新
Pull pre-computed ortholog calls from public databases (OrthoDB, Ensembl Compara, OMA browser, eggNOG, PANTHER, KEGG Orthology, HomoloGene) via their REST APIs. Use when orthologs are already curated upstream, when the question is "what is the X ortholog of Y" rather than "how to infer orthology de novo", when batch-mapping gene IDs across species, or when comparing the resources for consensus calls. Encodes confidence-level semantics, 1:1 vs 1:many vs many:many, HomoloGene deprecation, and when to defect to de novo computation.
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peacezha/TRACE☆ 32026年10月20日 更新
Compute genome-to-genome distances (ANI, AAI, dDDH, k-mer Mash) and assign taxonomic classifications using skani (Shaw 2023), FastANI (Jain 2018), pyani / pyANI ANIb / ANIm, OrthoANI (Lee 2016), AAI (amino-acid identity), dDDH via TYGS / GGDC, GTDB-Tk (Chaumeil 2020 standard prokaryote taxonomy), and Mash MinHash (Ondov 2016). Use when delineating prokaryote species (95% ANI threshold; Jain 2018 Nat Commun 9:5114), assigning genomes to GTDB taxonomy with ANI radius, computing genome similarity matrices for clustering, classifying archaea, evaluating MAG (metagenome-assembled genome) species assignment, applying skani for fast metagenomic ANI screening, or reconciling 16S rRNA-based taxonomy with whole-genome ANI.
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peacezha/TRACE☆ 32026年10月20日 更新
Computes sample size and power for clinical trials including continuous, binary, and time-to-event endpoints; superiority, non-inferiority, and equivalence designs; FDA 2016 non-inferiority margin selection with M1/M2 framework; Schoenfeld 1981 and Lakatos 1988 for survival; Schuirmann TOST and 80-125% bioequivalence; minimum clinically important difference (MCID) vs δ distinction. Use when justifying trial size in protocol or SAP per CONSORT 2025 item 7.
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peacezha/TRACE☆ 32026年10月20日 更新
Computes and interprets treatment effect measures (OR, RR, RD, HR, NNT) with calibrated confidence intervals (Wilson, Newcombe, Miettinen-Nurminen, MOVER, profile likelihood, Bender NNT) and reports marginal vs conditional estimands per FDA 2023 covariate adjustment guidance. Use when reporting treatment effects in confirmatory trials, comparing effect sizes across studies, or constructing forest plots.
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peacezha/TRACE☆ 32026年10月20日 更新
Visualizes ChIP-seq data using deepTools (computeMatrix, plotHeatmap, plotProfile, bamCoverage, bamCompare), pyGenomeTracks (modern INI-driven track plots), Gviz (R browser-style), EnrichedHeatmap (ComplexHeatmap-based), ChIPseeker tag heatmaps, and IGV batch screenshots. Handles bigWig normalization choices (CPM, BPM, RPGC, spike-in scaled), bamCompare operations (log2 ratio, subtract, SES), k-means clustering of heatmaps for biological subgrouping, and spike-in-scaled tracks for global-shift experiments. Use when generating publication-quality ChIP-seq signal heatmaps, profile plots, genome-browser tracks, or comparing samples visually.
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peacezha/TRACE☆ 32026年10月20日 更新
Assesses ChIP-seq quality across antibody specificity, fragmentation, enrichment, replicate concordance, and library complexity. Computes FRiP, NSC/RSC (phantompeakqualtools), library complexity (NRF/PBC1/PBC2), deepTools plotFingerprint (JS distance, AUC, synthetic JS), ChIPQC, IDR with ENCODE Nself/Nt rules, and detects hyper-ChIPable artifacts. Use when validating an antibody, diagnosing failed peak calls, deciding whether to proceed with downstream analysis, grading against ENCODE thresholds, or auditing replicate concordance.
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peacezha/TRACE☆ 32026年10月20日 更新
Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data. Uses BPNet (Avsec 2021 Nat Genet 53:354; soft motif syntax from ChIP-nexus), chromBPNet (Pampari A et al 2025 Nat Genet; bias-factorized base-resolution profiles), EnFormer (Avsec 2021 Nat Methods 18:1196; 196 kb input, ~100 kb effective receptive field), DeepSEA (Zhou 2015; multi-task CNN), and JASPAR 2026 deep-learning collection (1259 BPNet ChIP models). Performs in silico mutagenesis for variant-effect prediction, DeepLIFT/Grad attribution, and TF-MoDISco motif discovery from attribution scores. Use when predicting variant effects on TF binding, discovering soft motif syntax / cooperativity, integrating ChIP-seq with sequence-only predictions, or applying precomputed JASPAR Deep Learning models to new variants.
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peacezha/TRACE☆ 32026年10月20日 更新
Read this skill before the first step that uses the built-in browser, the browser pane inside the Claude desktop app (also called the in-app browser, the browser pane, Claude's browser, or "your own browser"), whose tools are named mcp__Claude_Browser__* when the session runs in the desktop app and mcp__remote-devices__Claude_Browser__* when a cloud session is linked to the person's computer; before those tools are turned on there may be a single enable__mcp__remote-devices__Claude_Browser tool instead. It covers the pane's persistent sign-ins, tabs and preview_start, reading pages as text, site approvals, what the pane cannot open, and what to do when it cannot be reached. It is not for Claude in Chrome (mcp__claude-in-chrome__* tools), which has its own skill, and it does not decide which browser to use.
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sebastianbreguel/dotfiles☆ 32026年10月8日 更新
Azure Machine Learning SDK v2 for Python. Use for ML workspaces, jobs, models, datasets, compute, and pipelines.
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phoroth/AGENTIC☆ 32026年8月8日 更新