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The BloodGen3Module package provides functions for R user performing module repertoire analyses and generating fingerprint representations. Functions can perform group comparison or individual sample analysis and visualization by fingerprint grid plot or fingerprint heatmap. Module repertoire analyses typically involve determining the percentage of the constitutive genes for each module that are significantly increased or decreased. As we describe in details;https://www.biorxiv.org/content/10.11

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MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound ma

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performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.

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hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based ce

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The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

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This package builds on existing tools and adds some simple but extremely useful capabilities for working wth ChIP-Seq data. The focus is on detecting differential binding windows/regions. One set of functions focusses on set-operations retaining mcols for GRanges objects, whilst another group of functions are to aid visualisation of results. Coercion to tibble objects is also implemented.

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Functions that are needed by many other packages or which replace R functions.

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Expert knowledge for Azure Spring Apps development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring ASA networking/security, Tanzu tools, observability/APM, CI/CD deployments, or blue‑green releases, and other Azure Spring Apps related development tasks. Not for Azure App Service (use azure-app-service), Azure Container Apps (use azure-container-apps), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Functions (use azure-functions).

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Expert knowledge for Azure Static Web Apps development including troubleshooting, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when wiring SWA APIs to Azure DBs, configuring custom domains/backends, Entra auth, CI/CD, or plan limits, and other Azure Static Web Apps related development tasks. Not for Azure App Service (use azure-app-service), Azure Functions (use azure-functions), Azure Container Apps (use azure-container-apps), Azure Web Application Firewall (use azure-web-application-firewall).

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Expert knowledge for Azure Logic Apps development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when building Logic Apps with AI/OpenAI, SAP/B2B, private endpoints, DevOps deployments, or DR/multi-region designs, and other Azure Logic Apps related development tasks. Not for Azure Functions (use azure-functions), Azure App Service (use azure-app-service), Azure Service Bus (use azure-service-bus), Azure Data Factory (use azure-data-factory).

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Expert knowledge for Azure Health Bot development including best practices, security, configuration, and integrations & coding patterns. Use when wiring Teams/SMS/WhatsApp channels, embedding web chat, calling external APIs, configuring handoff, or enforcing consent, and other Azure Health Bot related development tasks. Not for Azure AI Bot Service (use azure-bot-service), Azure Communication Services (use azure-communication-services), Azure Functions (use azure-functions).

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Expert knowledge for Azure Durable Task development including best practices, decision making, architecture & design patterns, limits & quotas, configuration, integrations & coding patterns, and deployment. Use when building Durable orchestrations with Azure Storage/SQL/Netherite, versioning deployments, or using instance APIs, and other Azure Durable Task related development tasks. Not for Azure Functions (use azure-functions), Azure Logic Apps (use azure-logic-apps), Azure App Service (use azure-app-service), Azure Service Fabric (use azure-service-fabric).

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Expert knowledge for Azure Data Api Builder development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when exposing DB objects via REST/GraphQL, tuning paging/timeouts, securing auth/RLS, or deploying DAB to Azure, and other Azure Data Api Builder related development tasks. Not for Azure API Management (use azure-api-management), Azure App Service (use azure-app-service), Azure Functions (use azure-functions), Azure Logic Apps (use azure-logic-apps).

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Expert knowledge for Azure Connector Namespace development including configuration. Use when setting up hosted MCP servers, defining Connector Namespace endpoints, auth settings, or runtime options, and other Azure Connector Namespace related development tasks. Not for Azure Service Connector (use azure-service-connector), Azure API Management (use azure-api-management), Azure Logic Apps (use azure-logic-apps), Azure Functions (use azure-functions).

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Expert knowledge for Azure App Service development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring App Service plans/ASEs, VNet integration, managed identity auth, deployment slots, or WebJobs, and other Azure App Service related development tasks. Not for Azure Functions (use azure-functions), Azure Container Apps (use azure-container-apps), Azure Static Web Apps (use azure-static-web-apps), Azure Spring Apps (use azure-spring-apps).

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Expert knowledge for Azure API Management development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring APIM gateways, policies, VNet networking, Entra/OAuth auth, or AI/LLM backends, and other Azure API Management related development tasks. Not for Azure Functions (use azure-functions), Azure Logic Apps (use azure-logic-apps), Azure Service Bus (use azure-service-bus).

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Expert knowledge for Azure App Configuration development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when using feature flags, dynamic config refresh, snapshots, Key Vault integration, or CI/CD config sync, and other Azure App Configuration related development tasks. Not for Azure App Service (use azure-app-service), Azure Key Vault (use azure-key-vault), Azure Functions (use azure-functions).

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Expert knowledge for Azure Automation development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when building runbooks, DSC configs, Hybrid Runbook Workers, managed identities, or Automation deployments, and other Azure Automation related development tasks. Not for Azure Functions (use azure-functions), Azure Logic Apps (use azure-logic-apps), Azure DevOps (use azure-devops), Azure DevTest Labs (use azure-devtest-labs).

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Expert knowledge for Azure Batch development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when configuring Batch pools/jobs, autoscale, private networking, quotas, or HPC/rendering workloads, and other Azure Batch related development tasks. Not for Azure Container Instances (use azure-container-instances), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Functions (use azure-functions), Azure Virtual Machines (use azure-virtual-machines).

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Expert knowledge for Azure AI Bot Service development including troubleshooting, decision making, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when using Direct Line 3.0, configuring Teams/Web Chat channels, setting App Service bots, CI/CD, or App Insights, and other Azure AI Bot Service related development tasks. Not for Azure Health Bot (use azure-health-bot), Azure Functions (use azure-functions), Azure App Service (use azure-app-service).

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Expert knowledge for Azure Cloud Services development including troubleshooting, best practices, decision making, limits & quotas, security, configuration, and integrations & coding patterns. Use when managing Guest OS versions, Key Vault certs, .csdef/.cscfg configs, autoscale rules, or PowerShell automation, and other Azure Cloud Services related development tasks. Not for Azure Virtual Machines (use azure-virtual-machines), Azure App Service (use azure-app-service), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Functions (use azure-functions).

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Expert knowledge for Azure Container Apps development including troubleshooting, best practices, decision making, architecture & design patterns, limits & quotas, security, configuration, integrations & coding patterns, and deployment. Use when securing ACA with Entra/OIDC, tuning workload profiles/GPUs, configuring KEDA/Dapr, or integrating Dapr/OpenTelemetry, and other Azure Container Apps related development tasks. Not for Azure App Service (use azure-app-service), Azure Functions (use azure-functions), Azure Kubernetes Service (AKS) (use azure-kubernetes-service), Azure Spring Apps (use azure-spring-apps).

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Use when calling callable functions (httpsCallable), passing data to server-side logic, handling function errors/timeouts, configuring regions, or testing with the Emulator Suite.

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Core Kotlin patterns for scope functions, backing properties, and read-only collection interfaces. Use for let/apply/run/also/with choices or encapsulating mutable state; defer general language constructs, extension functions, coroutines/runCatching, Android/Room recipes, and testing/tooling setup.

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