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Comprehensive Artificial Life skill combining ALIFE2025 proceedings, classic texts (Axelrod, Epstein-Axtell), ALIEN simulation, Lenia, NCA, swarm intelligence, and evolutionary computation. 337 pages extracted, 80+ papers, 153 figures.
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ALIFE 2025 Proceedings - 337 pages, 80+ papers on artificial life, evolution, emergence, cellular automata, neural networks, agent-based models. Full Mathpix extraction with equations and figures.
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Artificial Life atlas covering open-ended evolution, chemical reaction networks, morphogenesis, self-replication, and programmable chemistry. Use when picking a simulation framework, wiring ALife models into the skill graph, or onboarding contributors to the ALife cluster.
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Reference guide for the Twelve-Factor App methodology — 15 principles (12 original + 3 modern extensions) for building portable, resilient, cloud-native applications. Use when evaluating application architecture, designing cloud-native services, reviewing codebases for methodology compliance, advising on configuration, scaling, observability, security, and deployment patterns. Incorporates the 2025 open-source community evolution and cloud-native reinterpretations of each factor.
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AI-powered diary generation for agents - creates rich, reflective journal entries (400-600 words) with Quote Hall of Fame, Curiosity Backlog, Decision Archaeology, and Relationship Evolution. Generates personal, emotional entries from the agent's perspective. Works best with Claude models (Haiku, Sonnet, Opus).
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Weekly review of IWE work culture (element 14 — System Evolution). Runs during Week Close.
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SQLite database expertise for migrations, multi-tenant patterns, transactional safety, FTS5 virtual tables, and schema evolution. Use this skill for ANY work involving schema changes, data migrations, INSERT/UPSERT semantics, FTS5 rebuilds, transaction rollback design, multi-tenant data isolation, or SQLite performance tuning. Triggers include: writing migration SQL, modifying `_import_table`-style importers, designing UNIQUE/PK constraints, adding indexes for JOINs, debugging "rows missing" / "wrong count" / "stuck for hours" symptoms in SQLite-backed systems.
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Use when the user asks about evolution progress, current scores, best version, how many iterations ran, or whether the loop is stagnating.
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[Deprecated] skill lifecycle merged. Use `cm-skill-evolution` instead.
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[Deprecated] skill lifecycle merged. Use `cm-skill-evolution` instead.
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Repair or extend CodyMaster skills with a three-mode loop: FIX, DERIVED, and CAPTURED, grounded in current repo tooling.
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用生物演化逻辑（遗传变异+自然选择）应对不确定性，通过MVP启动→市场反馈筛选→变异创新→积累优势的循环来迭代产品或团队。适用于目标不明确、环境变化快、无法提前规划的场景。不适用于目标明确、路径清晰的确定性项目（用计划更高效）。计划与演化是阴阳互补：计划=阳（效率），演化=阴（应对不确定）。关键触发信号："不确定用户要什么"、"市场变化太快"、"计划赶不上变化"、"先跑起来再说"。
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Evaluates middle-market lending environment with competition analysis, spread trends, and deal structure evolution. Use when analyzing middle-market lending, tracking competitive dynamics, or assessing market conditions.
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Spring Data JPA entity design, repository patterns, query methods, JPQL, Flyway/Liquibase migrations, and N+1 avoidance. Apply on Spring Boot projects with spring-boot-starter-data-jpa. Pairs with spring-boot-plugin:spring-conventions and java-foundation:java-conventions. Use this skill to: - Design JPA entities with proper annotations, ID strategy, and lazy loading. - Write JpaRepository interfaces with derived query methods and JPQL @Query. - Avoid N+1 queries using @EntityGraph or JOIN FETCH. - Manage schema evolution with Flyway or Liquibase. - Project query results with Spring Data Projections and DTOs. Do NOT use this skill for: - Service or controller patterns — see spring-boot-plugin:spring-conventions. - Build tool setup — see java-foundation:build-tooling. - Test slices (@DataJpaTest) — see java-foundation:jvm-testing.
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Evolve SKILL.md files from agent execution traces using a three-stage pipeline: trajectory collection from observed runs, parallel multi-agent patch proposal for error and success analysis, and conflict-free consolidation of overlapping edits via prevalence-weighting. Based on the Trace2Skill methodology.
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Analyze the dynamics of diffusion processes using stochastic differential equations, Fokker-Planck equations, first-passage time distributions, and parameter sensitivity analysis. Use when deriving probability density evolution for a continuous-time diffusion process, computing mean first-passage times for bounded diffusion, analyzing how drift and diffusion parameters affect process behavior, or validating closed-form solutions against stochastic simulation.
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Execute structural metamorphosis using strangler fig migration, chrysalis phases, and interface preservation. Covers transformation planning, parallel running, progressive cutover, rollback design, and post-metamorphosis stabilization for system architecture evolution. Use when assess-form has classified the system as READY for transformation, when migrating from monolith to microservices, when replacing a core subsystem while dependents continue operating, or when any architectural change must be gradual rather than big-bang.
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Create, validate, and convert skills for the agent ecosystem. Enforces standardized structure for consistency. Enables self-evolution by creating new skills on demand, converting MCP servers and codebases to skills.
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Auto-evolution skill to initialize a new repository with AGENTS.md localized context.
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Start and manage the full heartbeat ecosystem for agent-studio. Registers all 7 heartbeat loops plus auto-reschedule task via CronCreate to keep the agent ecosystem healthy, indexed, informed, and connected.
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Benchmark external agent frameworks, auto-detect source type, scan for prompt injection, and convert findings into a concrete TDD upgrade backlog for agent-studio evolution.
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Creates specialized AI agents on-demand when no existing agent matches a request. Use when the Router cannot find a suitable agent for a task. Enables self-evolution by generating persistent agents.
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Comprehensive audit of a user's entire Claude environment — combines Project audit (six-dimension Project Scorecard, seven anti-patterns) with Global audit (six-dimension Global Layer Scorecard) plus Cross-Layer Alignment Check across all nine layers and Evolutionary Recommendations across four pathways. Produces a unified action plan. Use when user says "full audit of everything," "audit my entire Claude setup," "full stack audit," "comprehensive review of my project and preferences," "check everything," or wants the complete health check of both a specific Project AND their global configuration. Also use when a project audit reveals cross-layer issues that require full-stack visibility. Do NOT use for auditing only a Project (use rootnode-project-audit if available) or only global layers (use rootnode-global-audit if available). Do NOT use for single prompt evaluation (use rootnode-prompt-validation if available). Run on Opus 5 or Sonnet 5 at `high` effort (both defaults); depth reduces on legacy models.
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Independent re-derivation gate for proposed changes during autonomous execution. Evaluates a change (code diff, config edit, engine evolution, schema change) against the work's authority matrix and a 4-check protocol: invariant compliance, scope authorization, detection narrowness, and regression risk. Returns structured JSON with pass/fail per check, an overall verdict (APPROVE / REQUEST_CHANGES / REJECT), and blockers. Profile-driven thresholds (strict for unattended runs, lenient for desk supervision). Use when an autonomous agent proposes an engine change, when reviewing a Claude Code-authored modification before merge, or when an unattended profile requires independent re-derivation. Trigger on: "review/approve this proposed change," "critic-gate this," "is this change safe," "is this safe to merge," "should I let this land," "run the critic." Do NOT use for handoff-readiness checks (use rootnode-handoff-trigger-check), general code review, or design-time correctness. Authority matrix required.
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