“gdb”的搜索结果

Look up compound–target binding data in BindingDB using PDB or UniProt identifiers, or search for similar chemical structures. Receive concise summaries of matching records, with full API responses saved to a file when requested.

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• Find ligands linked to a PDB identifier
• Look up binding data for a UniProt entry
• Search for compounds with similar structures

OpenOCD 下载与调试工具，用于探针探测、固件烧录、Flash 擦除、GDB Server 启动、目标复位控制、 Telnet 在线调试（halt/resume/step/寄存器/内存/断点）、GDB 源码级调试，以及 Semihosting/ITM 输出捕获和底层查询。 当用户提到 OpenOCD、ST-Link、CMSIS-DAP、DAPLink、FTDI、烧录固件、擦除 Flash、GDB Server、 reset、interface/target/board 配置、openocd.cfg、在线调试、单步、断点、寄存器查看、 内存读写、semihosting 时自动触发，也兼容 /openocd 显式调用。 即使用户只是说"烧录一下"、"启动 GDB Server"、"擦除芯片"、"看看寄存器"、"单步调试" 或"抓一下 semihosting"，只要上下文涉及 OpenOCD 支持的开源调试器就应触发此 skill。

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Use when running GDB: breakpoints, watchpoints, segfault or hang debugging, reverse debugging, remote gdbserver, core dumps, pretty-printers, Python scripting, or multi-threaded debugging.

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Identify software protections that hinder inspection, such as debugger detection and obfuscation that makes code harder to understand. Support authorized binary analysis and CTF security challenges with protection findings, bypass strategies, reports, and analysis scripts.

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• Identify protections in an authorized malware sample
• Plan analysis of a packed executable
• Implement debugger detection for a CTF challenge

Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), compound (SMILES/name), or pathogen. Essential for drug discovery, lead optimization, polypharmacology analysis, and structure-activity relationship (SAR) studies.

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Query BindingDB for protein-ligand binding affinity data

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probe-rs 下载与调试工具，用于探针发现、固件烧录、复位、内存读写、GDB Server 调试和 RTT 日志读取。 当用户提到 probe-rs、cargo-embed、DAP、RTT、CMSIS-DAP、ST-Link、J-Link、烧录、芯片信息、 连接 under reset、probe 选择器、probe-rs gdb、probe-rs attach 时自动触发，也兼容 /probe-rs 显式调用。 即使用户只是说"用 probe-rs 烧进去"、"看看 RTT"或"拉个 backtrace"，只要上下文明确提到 probe-rs 的功能、CLI 命令或相关术语（如 cargo-embed、RTT、probe-rs flash）时就应触发此 skill。

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Use when you need to run a binary, trace execution, or observe runtime behavior. Runtime analysis via QEMU emulation, GDB debugging, and Frida hooking - syscall tracing (strace), breakpoints, memory inspection, function interception. Keywords - "run binary", "execute", "debug", "trace syscalls", "set breakpoint", "qemu", "gdb", "frida", "strace", "watch memory"

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Use when reverse engineering tools are missing, not working, or need configuration. Installation guides for radare2 (r2), Ghidra, GDB, QEMU, Frida, binutils, and cross-compilation toolchains. Keywords - "install radare2", "setup ghidra", "r2 not found", "qemu missing", "tool not installed", "configure gdb", "cross-compiler"

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MUST USE for any real runtime debugging across ANY language or binary — crashes, silent failures, wrong responses, stuck processes, memory leaks, async misbehavior, unexplained timing, reverse engineering. Runs a hypothesis-driven loop: form ≥3 hypotheses, investigate in parallel, after 2 failed rounds spawn Oracles from orthogonal angles, confirm root cause, lock with a failing test, fix minimally, QA by actually USING the system, scrub artifacts. The actual HOW lives in `references/` — READ THEM. Triggers: 'debug this', 'why is X not working', 'hanging', 'attach a debugger', 'reverse engineer', 'pwndbg', 'gdb', 'lldb', 'node inspect', 'tsx debug', 'pdb', 'dlv', 'delve', 'rust-gdb', 'set a breakpoint', 'context window exploded', 'why is the response empty', 'attach the debugger', 'debug it', 'why is this happening', 'trace this bug', 'reproduce and fix', 'silent failure', 'HTTP 200 but empty', 'why did it stop', 'inspect the binary', 'reverse engineering', 'playwright'.

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Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), compound (SMILES/name), or pathogen. Essential for drug discovery, lead optimization, polypharmacology analysis, and structure-activity relationship (SAR) studies.

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Find biological pathways and functions enriched in gene lists or ranked gene data. Choose an appropriate statistical method, align gene identifiers, define comparison backgrounds, and turn results into interpretable tables and plots with multiple-testing corrections.

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• Finding enriched pathways among differentially expressed genes
• Running GSEA on a complete ranked gene list
• Calculating gene-set scores for individual samples or cells

Analyze binaries with Ghidra to locate important functions, follow references, and inspect decompiled code, a readable approximation of the original program. Support both interactive investigation and automated batch analysis without a graphical interface.

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• Analyzing binaries when an IDA license is unavailable
• Locating important functions through strings and imported APIs
• Running batch decompilation or analysis in CI

Investigate how compiled or obfuscated programs work, including binaries, APKs, WASM, and firmware. Combine file inspection, decompilation, and observed execution to understand control flow, validation logic, and mechanisms that hinder analysis.

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• Understanding unfamiliar compiled programs
• Investigating obfuscation and anti-debugging logic
• Solving CTF validation challenges

Investigate CUDA crashes in SGLang using logs and inputs saved before execution. Inspect tensor shapes, data types, and numerical anomalies, with guidance for separate process logs and additional CUDA debugging tools.

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• Investigating illegal memory access and device-side assertions
• Tracing NaN or Inf values through kernel calls
• Saving inputs before a CUDA crash

Investigate SGLang runs that freeze across multiple GPUs. It uses stack traces, communication logs, GPU memory dumps, and comparisons between processes to locate state differences, trace their causes, and guide fixes.

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• Locate where a multi-GPU inference run freezes
• Compare logs from distributed processes
• Trace the first difference in process state

Analyze suspicious Linux ELF executables through file inspection, runtime tracing, and reverse engineering. Identify malware behavior, network destinations, and persistence mechanisms, then organize findings and indicators for investigations involving servers, containers, or cloud infrastructure.

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• Triaging suspicious executables on Linux servers
• Investigating suspected cryptominers
• Analyzing malware found in containers

Write and improve C code for systems and embedded projects, with explicit memory ownership, pointer handling, and error checks. The skill also covers build files, unit tests, debugging, and performance measurement.

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• Reviewing memory allocation and cleanup in C code
• Writing embedded code with limited memory
• Implementing threading with pthreads

Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. Trigger keywords: GSVA, ssGSEA, pathway enrichment, KEGG pathway analysis, MSigDB. NOT for: gene-level differential expression, single-cell analysis, methylation analysis, clinical diagnosis.

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tags: [bioconductor, r, proteomics, vignette-grounded]

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官方Viking CLI 命令行助手：本CLI覆盖火山引擎/BytePlus VikingDB(向量库)/Knowledge(知识库)/Memory(记忆库)的数据集管理和数据的读写及检索， 可用于扩展Agent的知识检索边界 提升Agent的记忆能力； 当用户对知识库/向量库提问时，使用本Skill; 当用户要操作向量库/知识库 或 从向量库/知识库检索信息时使用本Skill； 当用户要记忆检索和记忆存储时，使用本Skill。

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Use when reverse-engineering a binary or firmware — static triage + decompilation (Ghidra/IDA/Binary Ninja), dynamic instrumentation (GDB/Frida 17/angr), anti-reversing & packer bypass, OLLVM/VM deobfuscation, UEFI/BIOS RE & Secure Boot research, patch-diffing for n-days

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GSEA and over-representation analysis (ORA) for RNA-seq and proteomics. Wraps Enrichr for ORA against MSigDB, KEGG, GO, and 200+ databases; runs preranked GSEA on ranked DE gene lists. Outputs enrichment tables and running-score plots. Use after DESeq2 or edgeR for pathway-level interpretation.

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Cross-reference compound IDs across 20+ databases (ChEMBL, DrugBank, PubChem, ChEBI, PDB, SureChEMBL, HMDB, DrugCentral, BindingDB) via UniChem REST API. Resolve InChIKeys to source IDs, translate between source-specific IDs, find structurally related compounds by connectivity. POST with a JSON body for all cross-reference queries; only /sources is GET. No auth required.

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