Build and check research replication packages so a project's results can be reproduced. Routes checks to a dedicated agent that examines seeds, versions, file paths, workflow integrity, data documentation, execution environments, and matching outputs.
中文简介正在准备中。当前显示英语简介。
- Preparing a research replication package
- Checking seeds, versions, and file paths
- Verifying reproduced outputs against expected results
brycewang-stanford/Auto-Empirical-Research-Skills☆ 46962026年10月19日 更新
Turn research findings into academic abstracts, public summaries, press releases, and social posts tailored to each audience. Also supports reviewer responses, study pre-registration, reporting checklists, and checks on consistency and reproducibility.
中文简介正在准备中。当前显示英语简介。
- Drafting an abstract for journal submission
- Explaining research findings to the public
- Preparing point-by-point reviewer responses
brycewang-stanford/Auto-Empirical-Research-Skills☆ 46962026年10月19日 更新
Prepare constructive review drafts for scientific manuscripts, protocols, preprints, and proposals. Organize checks of claims, evidence, methods, statistics, reproducibility, ethics, figures, and citations into specific comments that a responsible human reviewer can verify and revise.
中文简介正在准备中。当前显示英语简介。
- Draft evidence-based comments on a scientific manuscript
- Check methods, statistics, and reproducibility reporting
- Choose reporting guidelines and identify missing information
K-Dense-AI/scientific-agent-skills☆ 5.3万2026年10月19日 更新
Review a research paper alongside its Stata, R, or Python code to check reproducibility, code quality, and agreement with the main findings. Receive a Markdown report with supporting evidence, uncertainties, strengths, and prioritized next steps.
中文简介正在准备中。当前显示英语简介。
- Checking reproducibility before sharing research code
- Matching main tables and figures to analysis scripts
- Reviewing dependencies, file paths, and execution order
brycewang-stanford/Auto-Empirical-Research-Skills☆ 46962026年10月19日 更新
Evaluate scientific manuscripts and grant proposals for sound methods, statistics, reproducibility, ethics, and clear reporting. Produce a structured review that separates major concerns from minor issues and gives authors specific, constructive suggestions for revision.
中文简介正在准备中。当前显示英语简介。
- Preparing a structured review of a scientific manuscript
- Evaluating methods and statistics in a grant proposal
- Checking reproducibility and reporting guidelines
brycewang-stanford/Auto-Empirical-Research-Skills☆ 46962026年10月19日 更新
Use when strengthening AISTATS reproducibility evidence, including the official reproducibility checklist, statistical assumptions, proofs, datasets, hyperparameters, random seeds, compute, uncertainty estimates, baselines, code/data release statements, and checklist-to-claim consistency audits.
中文简介正在准备中。当前显示原文说明。
brycewang-stanford/Awesome-Journal-Skills☆ 12832026年9月27日 更新
Use when strengthening the reproducibility of an ACM MM (ACM Multimedia) paper or preparing for the ACM MM Reproducibility track and ACM artifact badging — capturing environments, media/data access, seeds, and multimodal pipelines so an independent reviewer can rebuild results and reach Artifacts Evaluated or Results Reproduced badges.
中文简介正在准备中。当前显示原文说明。
brycewang-stanford/Awesome-Journal-Skills☆ 12832026年9月27日 更新
Review a data analysis for quality, correctness, and reproducibility. Covers data quality assessment, assumption checking, model validation, data leakage detection, and reproducibility verification. Use when reviewing a colleague's analysis before publication, validating an ML pipeline before production deployment, auditing a report for regulatory or business decision-making, or performing a second-analyst review in a regulated environment.
中文简介正在准备中。当前显示原文说明。
pjt222/agent-almanac☆ 422026年10月15日 更新
Assigns pathogen lineages (SARS-CoV-2 Pangolin via UShER mode; Nextclade clade + QC; pango-designation alias_key.json resolution) and tracks variant frequencies over time using Nextstrain (Augur + Auspice), wastewater deconvolution (Freyja, COJAC, alcov, lineagespot), lineage fitness modelling (Wenseleers / Bedford-Figgins multinomial logistic), and recombinant detection (3SEQ, RDP4, Bolotie). Covers Pangolin pangolin-data version pinning (mandatory for reproducibility), Nextclade dataset versioning (lineage-defining mutations change with dataset), Freyja barcode forward-only date constraint, ARTIC primer scheme version churn (V3 / V4 / V4.1 / V5.3.2 / Midnight 1200) with documented dropout regions, recombinant X-prefix Pango designation lag, GISAID vs INSDC dual-deposition tensions, and the Karthikeyan 2022 wastewater early-detection signal with explicit reproducibility caveats. Use when assigning Pango lineages and Nextclade clades to viral consensus sequences, building Nextstrain Augur surveillance pipelines, deconvolving wastewater pooled samples into lineage frequencies with Freyja, tracking lineage frequencies and growth advantages over time, pinning pangolin-data / Nextclade dataset versions for reproducibility, handling ARTIC primer dropouts (V4.1 amplicons 64 / 76 / 88-90), or running variant surveillance for SARS-CoV-2 / influenza / Mpox / RSV / H5N1 / measles.
中文简介正在准备中。当前显示原文说明。
peacezha/TRACE☆ 32026年10月20日 更新
Assigns pathogen lineages (SARS-CoV-2 Pangolin via UShER mode; Nextclade clade + QC; pango-designation alias_key.json resolution) and tracks variant frequencies over time using Nextstrain (Augur + Auspice), wastewater deconvolution (Freyja, COJAC, alcov, lineagespot), lineage fitness modelling (Wenseleers / Bedford-Figgins multinomial logistic), and recombinant detection (3SEQ, RDP4, Bolotie). Covers Pangolin pangolin-data version pinning (mandatory for reproducibility), Nextclade dataset versioning (lineage-defining mutations change with dataset), Freyja barcode forward-only date constraint, ARTIC primer scheme version churn (V3 / V4 / V4.1 / V5.3.2 / Midnight 1200) with documented dropout regions, recombinant X-prefix Pango designation lag, GISAID vs INSDC dual-deposition tensions, and the Karthikeyan 2022 wastewater early-detection signal with explicit reproducibility caveats. Use when assigning Pango lineages and Nextclade clades to viral consensus sequences, building Nextstrain Augur surveillance pipelines, deconvolving wastewater pooled samples into lineage frequencies with Freyja, tracking lineage frequencies and growth advantages over time, pinning pangolin-data / Nextclade dataset versions for reproducibility, handling ARTIC primer dropouts (V4.1 amplicons 64 / 76 / 88-90), or running variant surveillance for SARS-CoV-2 / influenza / Mpox / RSV / H5N1 / measles.
中文简介正在准备中。当前显示原文说明。
peacezha/HPClaw☆ 32026年10月11日 更新
Test for race conditions, where simultaneous requests disrupt expected processing order. Investigate duplicate redemptions, balance or vote changes, and authentication or request-limit failures, then verify actual effects and record reproducibility.
中文简介正在准备中。当前显示英语简介。
- Check coupons and gift cards for duplicate redemption
- Test balance updates and voting limits under concurrent requests
- Investigate timing flaws in authentication and account creation
elementalsouls/Claude-BugHunter☆ 51832026年10月19日 更新
Review econometric code, proofs, data workflows, and outputs with multiple specialist agents. Assess identification—the assumptions that let data establish an effect—alongside estimation, numerical stability, and reproducibility, then consolidate findings into prioritized tasks.
中文简介正在准备中。当前显示英语简介。
- Checking estimation code and standard errors
- Examining assumptions behind identification arguments
- Reviewing proofs and derivations before submission
brycewang-stanford/Auto-Empirical-Research-Skills☆ 46962026年10月19日 更新
Coordinate collaborative academic and policy writing, from author roles and timelines to draft revision, reviewer responses, and submission materials. Improve clarity and reproducibility while preserving authorial voice and flagging changes to claims or interpretations.
中文简介正在准备中。当前显示英语简介。
- Organizing coauthor roles and writing timelines
- Revising a methods section for clarity and reproducibility
- Drafting responses to reviewers
brycewang-stanford/Auto-Empirical-Research-Skills☆ 46962026年10月19日 更新
Review existing R scripts for code quality, reproducibility, domain correctness, and coding standards. Produce a separate report for each script, plus a severity-based summary of findings and the three most critical issues, without changing source files.
中文简介正在准备中。当前显示英语简介。
- Checking whether an analysis script is reproducible
- Reviewing R code against coding conventions
- Auditing several related R scripts
brycewang-stanford/Auto-Empirical-Research-Skills☆ 46962026年10月19日 更新
Use when refactoring research code for publication, adding documentation to existing analysis scripts, creating reproducible computational workflows, or preparing code for sharing with collaborators. Transforms research code into publication-ready, reproducible workflows. Adds documentation, implements error handling, creates environment specifications, and ensures computational reproducibility for scientific publications.
中文简介正在准备中。当前显示原文说明。
aipoch/medical-research-skills☆ 19752026年9月17日 更新
Detects methodological gaps across study design, analysis, validation, bias control, reproducibility, and implementation readiness within a biomedical research area. Use this skill when a user wants to identify what current studies are still methodologically missing, which weaknesses are most consequential, and what upgrade path would produce a stronger next-step study. Always separate design gaps, analysis gaps, validation gaps, and reproducibility gaps. Never treat technical complexity as methodological rigor.
中文简介正在准备中。当前显示原文说明。
aipoch/medical-research-skills☆ 19752026年9月17日 更新
Read-only R code review protocol for `.R` scripts. Checks code quality, reproducibility, domain correctness, tidyverse idioms, and professional standards; produces a report without editing. Use when user says "review this R script", "check the R code", "audit the analysis code", "code review on the R", or when an R file is touched as part of a paper submission. NOT for running the code — pair with `/audit-reproducibility` for numeric verification.
中文简介正在准备中。当前显示原文说明。
pedrohcgs/claude-code-my-workflow☆ 16662026年9月28日 更新
Use when strengthening ACM CCS reproducibility evidence, including the artifact-availability posture, threat-model-to-evidence mapping, attack reproduction steps, defense overhead measurement, measurement-dataset provenance, environment and version pinning, and honest justification when artifacts cannot be shared.
中文简介正在准备中。当前显示原文说明。
brycewang-stanford/Awesome-Journal-Skills☆ 12832026年9月27日 更新
Use when strengthening reproducibility evidence for an ACL paper reviewed through ACL Rolling Review, covering the Responsible NLP checklist end to end, hyperparameter and compute reporting, prompt and decoding disclosure for LLM experiments, data contamination auditing, variance across runs, and checklist-to-paper consistency.
中文简介正在准备中。当前显示原文说明。
brycewang-stanford/Awesome-Journal-Skills☆ 12832026年9月27日 更新
Use when strengthening AAMAS reproducibility evidence for interaction claims, including proofs and game definitions, opponent and population sets, self-play protocols, random seeds, compute, uncertainty on strategic outcomes, baselines, and consistency between what the paper claims about agents and what the artifact can actually show.
中文简介正在准备中。当前显示原文说明。
brycewang-stanford/Awesome-Journal-Skills☆ 12832026年9月27日 更新
Use when strengthening an AAAI paper's reproducibility checklist (placed after references), experimental traceability, seed and hyperparameter reporting, compute and cost disclosure, dataset access and licensing, code/data ZIP readiness, and the claim-to-evidence map that Phase-1 reviewers use to judge rigor across AAAI's broad AI scope.
中文简介正在准备中。当前显示原文说明。
brycewang-stanford/Awesome-Journal-Skills☆ 12832026年9月27日 更新
Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species ortholog/paralog calls. Use when pulling Ensembl-native data (Ensembl Gene IDs, version-pinned releases, archive endpoints for reproducibility), gene/transcript/exon structure with stable IDs, or VEP for variant annotation. Encodes the 15 req/sec rate limit, archive (e110.rest.ensembl.org) for reproducibility, Ensembl divisions (vertebrates / plants / fungi / metazoa / bacteria), and the symbol-vs-ID stability problem.
中文简介正在准备中。当前显示原文说明。
GPTomics/bioSkills☆ 12262026年8月15日 更新
Experiment executor and monitor for academic research. 2-agent system covering code experiments (ML training, statistical analysis, ETL, simulation) and human studies (surveys, field studies, interviews). 4 modes: run (execute + monitor code), manage (track human studies), validate (statistical interpretation + reproducibility verification), plan (Socratic experiment design). Use when a researcher wants to run or monitor a research experiment, manage or resume a human-subject study, check the statistics or reproducibility of research results, or design an experiment or study, in English or Chinese (e.g., 跑實驗、管理研究、驗證結果、規劃實驗).
中文简介正在准备中。当前显示原文说明。
Imbad0202/experiment-agent☆ 2062026年9月25日 更新
Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species ortholog/paralog calls. Use when pulling Ensembl-native data (Ensembl Gene IDs, version-pinned releases, archive endpoints for reproducibility), gene/transcript/exon structure with stable IDs, or VEP for variant annotation. Encodes the 15 req/sec rate limit, archive (e110.rest.ensembl.org) for reproducibility, Ensembl divisions (vertebrates / plants / fungi / metazoa / bacteria), and the symbol-vs-ID stability problem.
中文简介正在准备中。当前显示原文说明。
BioTender-max/awesome-bio-agent-skills☆ 2042026年7月2日 更新